Histone_ChIP-seq_ENCSR065ZNA
Histone_ChIP-seq ENCSR065ZNA [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR065ZNA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR065ZNA [biosamplesummary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN492THE|/analyses/ENCAN492THE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN492THE|/analyses/ENCAN492THE/} has in progress subobject document {0fa5fb9c-7574-4cd6-bbda-bcb2f84810f4|/documents/0fa5fb9c-7574-4cd6-bbda-bcb2f84810f4/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF171VPV|/files/ENCFF171VPV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF171VPV|/files/ENCFF171VPV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR065ZNA | float |
Histone_ChIP-seq_ENCSR065ZNA |
Histone_ChIP-seq ENCSR065ZNA [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K9me3"]
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[1.87, 16.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF357HJQ.bed.gz | 1.14 MB | e9672a05ddd638a86be9d80166eae86b |
| ENCFF357HJQ.bed.gz.dvc | 101.0 B | f46900f08447649580f2d9256714d974 |
| ENCFF357HJQ.tabix.bed.gz | 613.04 KB | 9568b131ec2fd7bc57cfdbd88abcd944 |
| ENCFF357HJQ.tabix.bed.gz.dvc | 106.0 B | 249263569457bb6ce26ca3c98b09f88f |
| ENCFF357HJQ.tabix.bed.gz.tbi | 311.45 KB | 18fe749a95083ded53eaab5c053de97a |
| ENCFF357HJQ.tabix.bed.gz.tbi.dvc | 110.0 B | f5708267c70ae744353a15004591459e |
| genomic_resource.yaml | 2.96 KB | eaa32db567e19dc72f05d0d74b6ac91a |
| genomic_resource_original.yaml | 2.83 KB | 963faa76b3cb7a19a16eb4dccb9cdc05 |
| statistics/ |