Resource

Id Histone_ChIP-seq/ENCSR064VLHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR064VLH [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR064VLH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001407/
  • biosample_summary: Homo sapiens germinal matrix tissue male embryo (20 weeks)
  • date_created: 2015-09-15T20:27:11.950265+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR064VLH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR064VLH float

Histone_ChIP-seq_ENCSR064VLH
Histone_ChIP-seq ENCSR064VLH [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR064VLH [1.84, 14.9]
n
76,205,389
mean
5.67
sd
1.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 762053892.37% 101678
chr1 7558904 3.04% 9652
chr2 6121294 2.53% 8499
chr3 4538062 2.29% 6316
chr4 2699719 1.42% 4078
chr5 3764261 2.07% 5340
chr6 4012052 2.35% 5735
chr7 3739887 2.35% 5227
chr8 3226658 2.22% 4639
chr9 3630444 2.62% 4664
chr10 3653562 2.73% 4973
chr11 4907544 3.63% 6030
chr12 3676416 2.76% 4877
chr13 1730384 1.51% 2501
chr14 2862409 2.67% 3762
chr15 2608241 2.56% 3325
chr16 3108201 3.44% 3905
chr17 4219228 5.07% 4916
chr18 1861285 2.32% 2607
chr19 2919829 4.98% 3522
chr20 2321307 3.60% 3006
chr21 649782 1.39% 920
chr22 1994831 3.93% 2379
chrX 398872 0.26% 800
chrY 2217 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101678 200 13864 749.48 573
global segment-length histogram

Files

Filename Size md5
ENCFF480OPN.bed.gz 1.82 MB b2dca21945ae256488b29ef7326d42cf
ENCFF480OPN.tabix.bed.gz 968.79 KB f37512ad5fa0b9059c9e7a0ecd94628e
ENCFF480OPN.tabix.bed.gz.tbi 334.62 KB 0186246c5b61331b8a6283110bf9bb31
genomic_resource.yaml 2.01 KB 6b583db4a7d2f345a97ce72f372433fd
statistics/