Resource

Id Histone_ChIP-seq/ENCSR064LHUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR064LHU [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR064LHU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (53 years)
  • date_created: 2017-07-28T10:09:10.165848+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR064LHU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR064LHU float

Histone_ChIP-seq_ENCSR064LHU
Histone_ChIP-seq ENCSR064LHU [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR064LHU [1.63, 11.1]
n
97,777,997
mean
3.79
sd
1.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 977779973.04% 110098
chr1 9733182 3.91% 10550
chr2 7626799 3.15% 8764
chr3 6307574 3.18% 7300
chr4 3646062 1.92% 4556
chr5 4693299 2.59% 5677
chr6 5367837 3.14% 6444
chr7 4066690 2.55% 4904
chr8 4248941 2.93% 5032
chr9 4827130 3.49% 5362
chr10 5233151 3.91% 5728
chr11 5783215 4.28% 6144
chr12 4513135 3.39% 5140
chr13 2055935 1.80% 2496
chr14 3518083 3.29% 3839
chr15 3658814 3.59% 3975
chr16 3871420 4.29% 4233
chr17 5466439 6.57% 5548
chr17_GL000205v2_random 613 0.33% 1
chr18 1997679 2.49% 2396
chr19 3576943 6.10% 3786
chr20 3140584 4.87% 3331
chr21 1012499 2.17% 1169
chr22 2738691 5.39% 2700
chrUn_GL000219v1 1859 1.04% 3
chrX 691423 0.44% 1020
3341 contigs with no values (185939711 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110098 240 19054 888.1 670
global segment-length histogram

Files

Filename Size md5
ENCFF917ETG.bed.gz 2.27 MB 42d82bfd633eeb09ee9f22069e2d8cd1
ENCFF917ETG.tabix.bed.gz 1.12 MB 9424490d54ab68674e4b369239420e5e
ENCFF917ETG.tabix.bed.gz.tbi 303.27 KB 35e85ec7f062c9a9ac1df0342fcd2ca2
genomic_resource.yaml 1.51 KB 60173fcc3711c05abe4d1871e8528dab
statistics/