Histone_ChIP-seq_ENCSR063HOI
Histone_ChIP-seq ENCSR063HOI [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR063HOI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR063HOI [biosamplesummary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN171LZX|/analyses/ENCAN171LZX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044SAF|/files/ENCFF044SAF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044SAF|/files/ENCFF044SAF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR063HOI | float |
Histone_ChIP-seq_ENCSR063HOI |
Histone_ChIP-seq ENCSR063HOI [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K4me3"]
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[1.21, 60.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF349OIL.bed.gz | 736.95 KB | 9298bfd6be07055f3780c03a795947a0 |
| ENCFF349OIL.bed.gz.dvc | 100.0 B | f2accfb33c5257251d767953b5b6e8ca |
| ENCFF349OIL.tabix.bed.gz | 312.2 KB | 91d561804518b73da024cdfdd859db35 |
| ENCFF349OIL.tabix.bed.gz.dvc | 106.0 B | 3842441965f30c0e605d35594addea3a |
| ENCFF349OIL.tabix.bed.gz.tbi | 170.63 KB | 865ed5fff854315e09d47b2f7ffb6492 |
| ENCFF349OIL.tabix.bed.gz.tbi.dvc | 110.0 B | 9833eaedd282ce9288b1b18e9f712cad |
| genomic_resource.yaml | 2.74 KB | 4329846372a2111453eba233a89be9e1 |
| genomic_resource_original.yaml | 2.61 KB | 409b0f4d791749fd3a82c0f802ee5dc7 |
| statistics/ |