Histone_ChIP-seq_ENCSR061UOM
Histone_ChIP-seq ENCSR061UOM [biosample_summary="Homo sapiens Caco-2" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR061UOM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR061UOM [biosamplesummary="Homo sapiens Caco-2" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN119AFS|/analyses/ENCAN119AFS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF469FAN|/files/ENCFF469FAN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF469FAN|/files/ENCFF469FAN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF737KSB|/files/ENCFF737KSB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF737KSB|/files/ENCFF737KSB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR061UOM | float |
Histone_ChIP-seq_ENCSR061UOM |
Histone_ChIP-seq ENCSR061UOM [biosample_summary="Homo sapiens Caco-2" and target="H3K4me1"]
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[1.24, 10.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF095KMQ.bed.gz | 2.71 MB | 2402738c9e224b9a9907bec502b47a93 |
| ENCFF095KMQ.bed.gz.dvc | 101.0 B | 5482c602da39bda75dd8b1ae8efe4295 |
| ENCFF095KMQ.tabix.bed.gz | 1.14 MB | b4364494fe6638d3091c7042afe0dfa4 |
| ENCFF095KMQ.tabix.bed.gz.dvc | 107.0 B | a9424ac1302bd9533de115323b44cd02 |
| ENCFF095KMQ.tabix.bed.gz.tbi | 326.68 KB | bd7b8558afd110753fe989ce0dbf0128 |
| ENCFF095KMQ.tabix.bed.gz.tbi.dvc | 110.0 B | 89bc80aa6611888fcf6a484cce27d1a3 |
| genomic_resource.yaml | 4.0 KB | 45e61362e4a9dc458a9a106fbdf83650 |
| genomic_resource_original.yaml | 3.89 KB | c34d7d2bcf9ee743e9af63eb5aacd020 |
| statistics/ |