Histone_ChIP-seq_ENCSR061NWO
Histone_ChIP-seq ENCSR061NWO [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR061NWO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR061NWO [biosamplesummary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN679YIL|/analyses/ENCAN679YIL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF238GSL|/files/ENCFF238GSL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8470585 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF238GSL|/files/ENCFF238GSL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF238GSL|/files/ENCFF238GSL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR061NWO | float |
Histone_ChIP-seq_ENCSR061NWO |
Histone_ChIP-seq ENCSR061NWO [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K9ac"]
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[2.07, 34] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF227EUU.bed.gz | 821.11 KB | 45c012c7b25dd6ce6c3af78997f70490 |
| ENCFF227EUU.bed.gz.dvc | 100.0 B | 119e2c2130dd7b7c86e8186c96ad6d56 |
| ENCFF227EUU.tabix.bed.gz | 402.09 KB | b8e0aedf0d4d36ca3e386986ba32a4cd |
| ENCFF227EUU.tabix.bed.gz.dvc | 106.0 B | d02e097cf463f86c1f9aec7aa6e9a826 |
| ENCFF227EUU.tabix.bed.gz.tbi | 158.06 KB | bf863562bff5374dd8842b3cb3e97f0e |
| ENCFF227EUU.tabix.bed.gz.tbi.dvc | 110.0 B | 21a488880f874db201bd9c4ad1d4432e |
| genomic_resource.yaml | 3.28 KB | 5953f53abb16f8cfa489db36b8fecba6 |
| genomic_resource_original.yaml | 3.13 KB | 7f16a0c251219d5f22a3b1ad905c0006 |
| statistics/ |