Resource
| Id | Histone_ChIP-seq/ENCSR060YIB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR060YIB [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN885UVS|/analyses/ENCAN885UVS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN885UVS|/analyses/ENCAN885UVS/} has in progress subobject document {6735bdf7-3207-4626-a38e-a507a20922d9|/documents/6735bdf7-3207-4626-a38e-a507a20922d9/} audit_not_compliant: Processed alignments file {ENCFF643PMZ|/files/ENCFF643PMZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26789166 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR060YIB | float |
Histone_ChIP-seq_ENCSR060YIB |
Histone_ChIP-seq ENCSR060YIB [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)" and target="H3K36me3"]
|
 |
[1.72, 32.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 153866637 | 4.78% | 205252 |
| chr1 | 14980963 | 6.02% | 19671 |
| chr2 | 11891398 | 4.91% | 16801 |
| chr3 | 9939411 | 5.01% | 13482 |
| chr4 | 6473896 | 3.40% | 9597 |
| chr5 | 7700143 | 4.24% | 10698 |
| chr6 | 7153479 | 4.19% | 10192 |
| chr7 | 7563702 | 4.75% | 10594 |
| chr8 | 5425228 | 3.74% | 7741 |
| chr9 | 6742172 | 4.87% | 8624 |
| chr10 | 6622202 | 4.95% | 9188 |
| chr11 | 7235039 | 5.36% | 8958 |
| chr12 | 8509065 | 6.38% | 11137 |
| chr13 | 3297955 | 2.88% | 4748 |
| chr14 | 4964505 | 4.64% | 6875 |
| chr15 | 5835085 | 5.72% | 7702 |
| chr16 | 6634576 | 7.34% | 7900 |
| chr17 | 7962543 | 9.56% | 10135 |
| chr18 | 2656894 | 3.31% | 3924 |
| chr19 | 9017327 | 15.38% | 9251 |
| chr20 | 4330527 | 6.72% | 5548 |
| chr21 | 1968619 | 4.21% | 2392 |
| chr22 | 3764026 | 7.41% | 4227 |
| chrX | 2987330 | 1.91% | 5481 |
| chrY | 210552 | 0.37% | 386 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 205252 | 135 | 26703 | 749.65 | 473 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF802LQZ.bed.gz | 3.89 MB | a7e07c1fa514650f9dc59df7cff25ec2 |
| ENCFF802LQZ.tabix.bed.gz | 1.9 MB | 0f0c51045fc910814dc1bdb85a82750d |
| ENCFF802LQZ.tabix.bed.gz.tbi | 186.55 KB | 44b8490e53e9cb3f88d89e73772c73a1 |
| genomic_resource.yaml | 2.28 KB | d26d41506bdfdec90f2c1244a63fb11b |
| statistics/ |