Histone_ChIP-seq_ENCSR058FCG
Histone_ChIP-seq ENCSR058FCG [biosample_summary="Homo sapiens neutrophil" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR058FCG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR058FCG [biosamplesummary="Homo sapiens neutrophil" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN328HTF|/analyses/ENCAN328HTF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF517KOQ|/files/ENCFF517KOQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF517KOQ|/files/ENCFF517KOQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.33. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF357NBS|/files/ENCFF357NBS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF357NBS|/files/ENCFF357NBS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.42. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR058FCG | float |
Histone_ChIP-seq_ENCSR058FCG |
Histone_ChIP-seq ENCSR058FCG [biosample_summary="Homo sapiens neutrophil" and target="H3K27me3"]
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[1.48, 34.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF960HNH.bed.gz | 2.11 MB | 8ad8c2b7691dc7755e7eb83b4c147f73 |
| ENCFF960HNH.bed.gz.dvc | 101.0 B | 609a14559d1a276f1f839bb058a4e474 |
| ENCFF960HNH.tabix.bed.gz | 1022.96 KB | a7440c8c89f7f53567aa6b7dcefdb2cc |
| ENCFF960HNH.tabix.bed.gz.dvc | 107.0 B | a5921fa34b005b380d6f0141c8fc011f |
| ENCFF960HNH.tabix.bed.gz.tbi | 199.87 KB | 62c9d3a2fddcd05f57efb8c5f05c8ed9 |
| ENCFF960HNH.tabix.bed.gz.tbi.dvc | 110.0 B | 9c7eea96a3ba8afb7c5dcea70eaa2da5 |
| genomic_resource.yaml | 3.99 KB | bf192cc0661efb5035b24f063fcfca42 |
| genomic_resource_original.yaml | 3.87 KB | 67aa772413dab63d14322f775635cdec |
| statistics/ |