Resource

Id Histone_ChIP-seq/ENCSR058AUBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR058AUB [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR058AUB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:09.131355+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR058AUB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR058AUB float

Histone_ChIP-seq_ENCSR058AUB
Histone_ChIP-seq ENCSR058AUB [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR058AUB [1.78, 36.9]
n
46,569,100
mean
8.55
sd
4.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 465691001.45% 66830
chr1 4963170 1.99% 6971
chr2 3315946 1.37% 4734
chr3 2694711 1.36% 3803
chr4 1700974 0.89% 2517
chr5 2164071 1.19% 3115
chr6 2506268 1.47% 3556
chr7 1986343 1.25% 3044
chr8 1645264 1.13% 2460
chr9 2234076 1.61% 3194
chr10 2309148 1.73% 3300
chr11 2826767 2.09% 3947
chr12 2266837 1.70% 3179
chr13 958434 0.84% 1428
chr14 1626974 1.52% 2300
chr15 1561001 1.53% 2240
chr16 1807689 2.00% 2702
chr17 2841373 3.41% 3982
chr18 829065 1.03% 1220
chr19 2491130 4.25% 3500
chr20 1294219 2.01% 1904
chr21 494785 1.06% 745
chr22 1238339 2.44% 1713
chrX 812516 0.52% 1276
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66830 155 13507 696.83 539
global segment-length histogram

Files

Filename Size md5
ENCFF340IAY.bed.gz 1.45 MB 188655ebc694029ad1abed059191d2e7
ENCFF340IAY.tabix.bed.gz 691.08 KB 12c2899b2eb550f02ba22ca07ff865a1
ENCFF340IAY.tabix.bed.gz.tbi 220.14 KB 497ef2109a5915d3ee14789dcd56ae3a
genomic_resource.yaml 1.52 KB 3bd1dcec7cc71ed0d490be8336bb6dd6
statistics/