Histone_ChIP-seq_ENCSR057MWG
Histone_ChIP-seq ENCSR057MWG [biosample_summary="Homo sapiens MCF-7" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR057MWG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR057MWG [biosamplesummary="Homo sapiens MCF-7" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN805CGK|/analyses/ENCAN805CGK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN805CGK|/analyses/ENCAN805CGK/} has in progress subobject document {09db78c6-a964-42b6-85bb-bcdd3295765f|/documents/09db78c6-a964-42b6-85bb-bcdd3295765f/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF687JRM|/files/ENCFF687JRM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF687JRM|/files/ENCFF687JRM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR057MWG | float |
Histone_ChIP-seq_ENCSR057MWG |
Histone_ChIP-seq ENCSR057MWG [biosample_summary="Homo sapiens MCF-7" and target="H2AFZ"]
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[1.24, 29.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF378IVZ.bed.gz | 1.31 MB | 836f8a5906bde7f8f800f2f9c36c3d93 |
| ENCFF378IVZ.bed.gz.dvc | 101.0 B | d81a26b543fc2d81de1645aec61901db |
| ENCFF378IVZ.tabix.bed.gz | 579.85 KB | 162b541671e8010cb04b99d567f4a9b9 |
| ENCFF378IVZ.tabix.bed.gz.dvc | 106.0 B | 8bcd50b9800a9847599347a2b41dc85d |
| ENCFF378IVZ.tabix.bed.gz.tbi | 269.2 KB | 9790c2e9b58e62c591adaf1186ecd25f |
| ENCFF378IVZ.tabix.bed.gz.tbi.dvc | 110.0 B | 11abd96933c9e7ff01414b5162cf9296 |
| genomic_resource.yaml | 2.9 KB | b49abe918d3283273a4f07cf0e78f5e7 |
| genomic_resource_original.yaml | 2.79 KB | 81e748cebe47c5b51b3de12f4d9c0961 |
| statistics/ |