Resource
| Id | Histone_ChIP-seq/ENCSR057MWG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR057MWG [biosample_summary="Homo sapiens MCF-7" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN805CGK|/analyses/ENCAN805CGK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN805CGK|/analyses/ENCAN805CGK/} has in progress subobject document {09db78c6-a964-42b6-85bb-bcdd3295765f|/documents/09db78c6-a964-42b6-85bb-bcdd3295765f/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF687JRM|/files/ENCFF687JRM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF687JRM|/files/ENCFF687JRM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR057MWG | float |
Histone_ChIP-seq_ENCSR057MWG |
Histone_ChIP-seq ENCSR057MWG [biosample_summary="Homo sapiens MCF-7" and target="H2AFZ"]
|
 |
[1.24, 29.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46966671 | 1.46% | 52916 |
| chr1 | 4235611 | 1.70% | 4693 |
| chr2 | 3789955 | 1.56% | 4335 |
| chr3 | 2978410 | 1.50% | 3421 |
| chr4 | 1797911 | 0.95% | 2036 |
| chr5 | 2529541 | 1.39% | 2846 |
| chr6 | 2994084 | 1.75% | 3296 |
| chr7 | 2416373 | 1.52% | 2771 |
| chr8 | 1977925 | 1.36% | 2357 |
| chr9 | 1878413 | 1.36% | 2058 |
| chr10 | 2189667 | 1.64% | 2536 |
| chr11 | 1946618 | 1.44% | 2138 |
| chr12 | 2474992 | 1.86% | 2687 |
| chr13 | 963804 | 0.84% | 1127 |
| chr14 | 1925966 | 1.80% | 2066 |
| chr15 | 1688873 | 1.66% | 1832 |
| chr16 | 1738683 | 1.92% | 1909 |
| chr17 | 2485590 | 2.99% | 2733 |
| chr18 | 627705 | 0.78% | 759 |
| chr19 | 2064339 | 3.52% | 2276 |
| chr20 | 1836038 | 2.85% | 2142 |
| chr21 | 571538 | 1.22% | 672 |
| chr22 | 659217 | 1.30% | 835 |
| chrX | 1195418 | 0.77% | 1391 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52916 | 200 | 5961 | 887.57 | 684 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF378IVZ.bed.gz | 1.31 MB | 836f8a5906bde7f8f800f2f9c36c3d93 |
| ENCFF378IVZ.tabix.bed.gz | 579.85 KB | 162b541671e8010cb04b99d567f4a9b9 |
| ENCFF378IVZ.tabix.bed.gz.tbi | 269.2 KB | 9790c2e9b58e62c591adaf1186ecd25f |
| genomic_resource.yaml | 2.9 KB | b49abe918d3283273a4f07cf0e78f5e7 |
| statistics/ |