Histone_ChIP-seq_ENCSR056GGE
Histone_ChIP-seq ENCSR056GGE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR056GGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR056GGE [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN838BWB|/analyses/ENCAN838BWB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF857EPZ|/files/ENCFF857EPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF857EPZ|/files/ENCFF857EPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR056GGE | float |
Histone_ChIP-seq_ENCSR056GGE |
Histone_ChIP-seq ENCSR056GGE [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K4me1"]
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[1.55, 17] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF764OBT.bed.gz | 3.56 MB | 9f07ab8bbdcb19c5f146dbcadb5521f2 |
| ENCFF764OBT.bed.gz.dvc | 101.0 B | 6a0cb25ea94a0db0f8f4291e91e9e214 |
| ENCFF764OBT.tabix.bed.gz | 1.59 MB | a0d3d4a345b5f3229417b12d7bcc8dd5 |
| ENCFF764OBT.tabix.bed.gz.dvc | 107.0 B | 6ab1234fdfb6c0a3ab31273f02f5c1be |
| ENCFF764OBT.tabix.bed.gz.tbi | 328.19 KB | 96a7fbea24909f68c741bd963992cff0 |
| ENCFF764OBT.tabix.bed.gz.tbi.dvc | 110.0 B | 8a8b13e422e88fa13632054b64f97135 |
| genomic_resource.yaml | 2.79 KB | c305d653c48f2d79067e66da2f6e3726 |
| genomic_resource_original.yaml | 2.65 KB | a4ce99c9e3aa3fe167ebae27318aa1fc |
| statistics/ |