Resource
| Id | Histone_ChIP-seq/ENCSR056CYG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR056CYG [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR056CYG | float |
Histone_ChIP-seq_ENCSR056CYG |
Histone_ChIP-seq ENCSR056CYG [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
|
 |
[1.23, 77] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51877489 | 1.61% | 53921 |
| chr1 | 4946562 | 1.99% | 4977 |
| chr1_KI270706v1_random | 300 | 0.17% | 1 |
| chr1_KI270709v1_random | 1781 | 2.66% | 3 |
| chr1_KI270712v1_random | 2778 | 1.58% | 5 |
| chr1_KI270713v1_random | 2384 | 5.85% | 6 |
| chr2 | 3410247 | 1.41% | 3690 |
| chr3 | 2579398 | 1.30% | 2588 |
| chr3_GL000221v1_random | 875 | 0.56% | 1 |
| chr4 | 1826314 | 0.96% | 1854 |
| chr4_GL000008v2_random | 2903 | 1.38% | 3 |
| chr5 | 2409142 | 1.33% | 2438 |
| chr6 | 2628518 | 1.54% | 2434 |
| chr7 | 2491494 | 1.56% | 2623 |
| chr8 | 2159046 | 1.49% | 2515 |
| chr9 | 2100718 | 1.52% | 2176 |
| chr9_KI270717v1_random | 442 | 1.10% | 1 |
| chr9_KI270719v1_random | 804 | 0.45% | 2 |
| chr10 | 2285406 | 1.71% | 2538 |
| chr11 | 2595629 | 1.92% | 2569 |
| chr12 | 2596017 | 1.95% | 2568 |
| chr13 | 1013906 | 0.89% | 1061 |
| chr14 | 1650224 | 1.54% | 1686 |
| chr14_GL000009v2_random | 647 | 0.32% | 1 |
| chr14_GL000194v1_random | 961 | 0.50% | 1 |
| chr14_GL000225v1_random | 2154 | 1.02% | 6 |
| chr14_KI270724v1_random | 726 | 1.84% | 2 |
| chr14_KI270725v1_random | 567 | 0.33% | 1 |
| chr15 | 1637315 | 1.61% | 1713 |
| chr15_KI270727v1_random | 250 | 0.06% | 1 |
| chr16 | 2341743 | 2.59% | 2429 |
| chr16_KI270728v1_random | 833 | 0.04% | 2 |
| chr17 | 3279234 | 3.94% | 3277 |
| chr17_GL000205v2_random | 10042 | 5.41% | 7 |
| chr17_KI270729v1_random | 11588 | 4.13% | 22 |
| chr17_KI270730v1_random | 1828 | 1.62% | 6 |
| chr18 | 837737 | 1.04% | 915 |
| chr19 | 4094844 | 6.99% | 4455 |
| chr20 | 1473570 | 2.29% | 1579 |
| chr21 | 690987 | 1.48% | 828 |
| chr22 | 1351946 | 2.66% | 1448 |
| chr22_KI270732v1_random | 250 | 0.60% | 1 |
| chr22_KI270733v1_random | 3283 | 1.83% | 7 |
| chr22_KI270735v1_random | 1427 | 3.33% | 3 |
| chr22_KI270736v1_random | 3876 | 2.13% | 12 |
| chr22_KI270737v1_random | 995 | 0.96% | 3 |
| chr22_KI270738v1_random | 268 | 0.27% | 1 |
| chrUn_GL000195v1 | 3796 | 2.08% | 6 |
| chrUn_GL000214v1 | 250 | 0.18% | 1 |
| chrUn_GL000216v2 | 10731 | 6.08% | 26 |
| chrUn_GL000219v1 | 3807 | 2.12% | 3 |
| chrUn_GL000220v1 | 784 | 0.48% | 3 |
| chrUn_GL000224v1 | 901 | 0.50% | 3 |
| chrUn_KI270438v1 | 8798 | 7.82% | 10 |
| chrUn_KI270442v1 | 6179 | 1.58% | 16 |
| chrUn_KI270589v1 | 250 | 0.56% | 1 |
| chrUn_KI270744v1 | 1948 | 1.16% | 4 |
| chrUn_KI270749v1 | 582 | 0.37% | 1 |
| chrUn_KI270751v1 | 250 | 0.17% | 1 |
| chrUn_KI270753v1 | 258 | 0.41% | 1 |
| chrUn_KI270754v1 | 631 | 1.57% | 2 |
| chrUn_KI270756v1 | 1939 | 2.44% | 6 |
| chrUn_KI270757v1 | 485 | 0.68% | 1 |
| chrX | 1373986 | 0.88% | 1353 |
| chrY | 9955 | 0.02% | 24 |
| 3302 contigs with no values (121371502 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53921 | 250 | 18641 | 962.1 | 472 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF366AXH.bed.gz | 1.2 MB | 93efb4384eb1868839e660d76579af2a |
| ENCFF366AXH.tabix.bed.gz | 568.44 KB | 2cd60444116797c021b8f3c5381f17f5 |
| ENCFF366AXH.tabix.bed.gz.tbi | 220.6 KB | 2081dffeb710f5b8c6a1ac827fd33fe3 |
| genomic_resource.yaml | 3.12 KB | db2bfe2937f62406fc5ac8d5125b949d |
| statistics/ |