Resource
| Id | Histone_ChIP-seq/ENCSR055ZZY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR055ZZY [biosample_summary="Homo sapiens IMR-90" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN936FUZ|/analyses/ENCAN936FUZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF936HMP|/files/ENCFF936HMP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26929547 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF196MWI|/files/ENCFF196MWI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29386615 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF899BYS|/files/ENCFF899BYS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29386615 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR055ZZY | float |
Histone_ChIP-seq_ENCSR055ZZY |
Histone_ChIP-seq ENCSR055ZZY [biosample_summary="Homo sapiens IMR-90" and target="H3K9me3"]
|
 |
[1.59, 27.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 65421652 | 2.03% | 166610 |
| chr1 | 3954237 | 1.59% | 9690 |
| chr2 | 4858646 | 2.01% | 13073 |
| chr3 | 2804172 | 1.41% | 7949 |
| chr4 | 2841187 | 1.49% | 7964 |
| chr5 | 3971841 | 2.19% | 10596 |
| chr6 | 3095829 | 1.81% | 8248 |
| chr7 | 4734916 | 2.97% | 11935 |
| chr8 | 4258251 | 2.93% | 10587 |
| chr9 | 2023586 | 1.46% | 5381 |
| chr10 | 4593847 | 3.43% | 11178 |
| chr11 | 1955321 | 1.45% | 5070 |
| chr12 | 3495610 | 2.62% | 8473 |
| chr13 | 1685378 | 1.47% | 4428 |
| chr14 | 2387185 | 2.23% | 5984 |
| chr15 | 2244581 | 2.20% | 5640 |
| chr16 | 2586332 | 2.86% | 6812 |
| chr17 | 1486404 | 1.79% | 3702 |
| chr18 | 2170430 | 2.70% | 5735 |
| chr19 | 3984477 | 6.80% | 8176 |
| chr20 | 1495765 | 2.32% | 4035 |
| chr21 | 1201086 | 2.57% | 3198 |
| chr22 | 1691128 | 3.33% | 3318 |
| chrX | 1851066 | 1.19% | 5328 |
| chrY | 50377 | 0.09% | 110 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 166610 | 150 | 34452 | 392.66 | 315 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF872UDE.bed.gz | 2.73 MB | 04dc846bb36c08ec3c4cbcccc871243b |
| ENCFF872UDE.tabix.bed.gz | 1.44 MB | a9e9f2b45e4039524d423c0742104b4f |
| ENCFF872UDE.tabix.bed.gz.tbi | 352.59 KB | 0b37454b2f596b0d82cb4d30eb717647 |
| genomic_resource.yaml | 2.87 KB | 6e7305bad4cbeee626a4ac83b0caf481 |
| statistics/ |