Resource
| Id | Histone_ChIP-seq/ENCSR055MOQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR055MOQ [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN636JKF|/analyses/ENCAN636JKF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF658INR|/files/ENCFF658INR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27132959 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR055MOQ | float |
Histone_ChIP-seq_ENCSR055MOQ |
Histone_ChIP-seq ENCSR055MOQ [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K36me3"]
|
 |
[1.85, 19.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 73254005 | 2.28% | 130975 |
| chr1 | 7505826 | 3.01% | 13108 |
| chr2 | 5694534 | 2.35% | 10574 |
| chr3 | 4619054 | 2.33% | 8491 |
| chr4 | 3122969 | 1.64% | 6042 |
| chr5 | 3678936 | 2.03% | 6790 |
| chr6 | 3439949 | 2.01% | 6315 |
| chr7 | 3092951 | 1.94% | 5850 |
| chr8 | 2512596 | 1.73% | 4765 |
| chr9 | 3238815 | 2.34% | 5728 |
| chr10 | 3188011 | 2.38% | 5878 |
| chr11 | 3859704 | 2.86% | 6519 |
| chr12 | 4154902 | 3.12% | 7310 |
| chr13 | 1405538 | 1.23% | 2779 |
| chr14 | 2596928 | 2.43% | 4644 |
| chr15 | 2895150 | 2.84% | 5194 |
| chr16 | 3232082 | 3.58% | 5425 |
| chr17 | 4108043 | 4.93% | 6811 |
| chr18 | 1234143 | 1.54% | 2399 |
| chr19 | 3694933 | 6.30% | 6174 |
| chr20 | 2275851 | 3.53% | 3739 |
| chr21 | 971672 | 2.08% | 1667 |
| chr22 | 1925075 | 3.79% | 3013 |
| chrX | 806343 | 0.52% | 1760 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 130975 | 150 | 12648 | 559.3 | 428 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF335ZDY.bed.gz | 2.54 MB | 43d075f146eba71886e8814baf6c99f3 |
| ENCFF335ZDY.tabix.bed.gz | 1.24 MB | 0a22213c8f0f06c2ab6ca28d7f48a409 |
| ENCFF335ZDY.tabix.bed.gz.tbi | 180.38 KB | 2d4df9509b95fe4bfbd23ffb0fef14c0 |
| genomic_resource.yaml | 2.02 KB | c7db328788b9205eb5d15a4eb56ac164 |
| statistics/ |