Resource
| Id | Histone_ChIP-seq/ENCSR055JGU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR055JGU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN331SAL|/analyses/ENCAN331SAL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF612TXM|/files/ENCFF612TXM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 43822880 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR055JGU | float |
Histone_ChIP-seq_ENCSR055JGU |
Histone_ChIP-seq ENCSR055JGU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K27me3"]
|
 |
[1.63, 13.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45515578 | 1.41% | 40386 |
| chr1 | 2023416 | 0.81% | 1559 |
| chr2 | 1716369 | 0.71% | 1226 |
| chr3 | 690404 | 0.35% | 528 |
| chr4 | 1009659 | 0.53% | 689 |
| chr5 | 1294793 | 0.71% | 926 |
| chr6 | 1699069 | 0.99% | 1106 |
| chr7 | 1338779 | 0.84% | 859 |
| chr8 | 1033134 | 0.71% | 815 |
| chr9 | 874798 | 0.63% | 625 |
| chr10 | 1429843 | 1.07% | 1051 |
| chr11 | 940233 | 0.70% | 731 |
| chr12 | 1236999 | 0.93% | 906 |
| chr13 | 553070 | 0.48% | 389 |
| chr14 | 1174259 | 1.10% | 956 |
| chr15 | 822262 | 0.81% | 697 |
| chr16 | 1082336 | 1.20% | 905 |
| chr17 | 1601819 | 1.92% | 1097 |
| chr18 | 467796 | 0.58% | 389 |
| chr19 | 1448023 | 2.47% | 1148 |
| chr20 | 1077558 | 1.67% | 896 |
| chr21 | 408113 | 0.87% | 364 |
| chr22 | 499013 | 0.98% | 473 |
| chrX | 21093833 | 13.52% | 22051 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 40386 | 235 | 48942 | 1127.01 | 797 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF105UFM.bed.gz | 779.78 KB | b4cf541f187eb004b7eb27c6285606aa |
| ENCFF105UFM.tabix.bed.gz | 402.78 KB | a4b9cc97f2754fa800408dae6d83b56f |
| ENCFF105UFM.tabix.bed.gz.tbi | 114.93 KB | 587484335bd0a254c46ab665cda1e883 |
| genomic_resource.yaml | 2.19 KB | 96eb66937c2d7a9fa483a628912af162 |
| statistics/ |