Histone_ChIP-seq_ENCSR054IRX
Histone_ChIP-seq ENCSR054IRX [biosample_summary="Homo sapiens IMR-90" and target="H2BK20ac"]
×
| Id: | Histone_ChIP-seq/ENCSR054IRX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR054IRX [biosamplesummary="Homo sapiens IMR-90" and target="H2BK20ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN841NAA|/analyses/ENCAN841NAA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF774KAG|/files/ENCFF774KAG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11036329 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK20ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF135VSC|/files/ENCFF135VSC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF135VSC|/files/ENCFF135VSC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR054IRX | float |
Histone_ChIP-seq_ENCSR054IRX |
Histone_ChIP-seq ENCSR054IRX [biosample_summary="Homo sapiens IMR-90" and target="H2BK20ac"]
|
|
[1.76, 42.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF237BCI.bed.gz | 4.03 MB | 9e669678c5531b2ef028b6dc87cb00bf |
| ENCFF237BCI.bed.gz.dvc | 101.0 B | ebc0cc4689fbb5ffe99315702bac3ed0 |
| ENCFF237BCI.tabix.bed.gz | 1.78 MB | 9f74c3ecbfdeb7cca0abca78ad0cb991 |
| ENCFF237BCI.tabix.bed.gz.dvc | 107.0 B | c891dc7f3d747794a3f386172daa7d07 |
| ENCFF237BCI.tabix.bed.gz.tbi | 289.53 KB | edb9a64e9b7f9f322d46f9f646330ad8 |
| ENCFF237BCI.tabix.bed.gz.tbi.dvc | 110.0 B | 56f208dd9c3239914ab48544da8151a9 |
| genomic_resource.yaml | 3.17 KB | 97d4d5cfbbb6e5b603b299b9441905d4 |
| genomic_resource_original.yaml | 3.06 KB | 701a75ca061196832d08c5e22b25887a |
| statistics/ |