Resource

Id Histone_ChIP-seq/ENCSR053KIScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR053KIS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR053KIS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:44.521262+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR053KIS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR053KIS float

Histone_ChIP-seq_ENCSR053KIS
Histone_ChIP-seq ENCSR053KIS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR053KIS [1.53, 11.8]
n
63,703,873
mean
4.07
sd
1.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 637038731.98% 69385
chr1 2365437 0.95% 2458
chr2 2193762 0.91% 2211
chr3 861606 0.43% 913
chr4 1216993 0.64% 1132
chr5 1566768 0.86% 1416
chr6 2143106 1.25% 1786
chr7 1618626 1.02% 1414
chr8 1303270 0.90% 1361
chr9 997135 0.72% 965
chr10 1637621 1.22% 1659
chr11 1104456 0.82% 1158
chr12 1466546 1.10% 1429
chr13 760400 0.66% 774
chr14 1532035 1.43% 1547
chr15 1174946 1.15% 1321
chr16 1347681 1.49% 1496
chr17 1790902 2.15% 1601
chr18 639651 0.80% 718
chr19 1538182 2.62% 1573
chr20 1165227 1.81% 1291
chr21 555413 1.19% 642
chr22 560834 1.10% 698
chrX 34163276 21.89% 39822
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69385 215 51609 918.12 645
global segment-length histogram

Files

Filename Size md5
ENCFF169UVC.bed.gz 1.26 MB 1f72124e6eb15cac6fed2d5a504730fb
ENCFF169UVC.tabix.bed.gz 672.54 KB 22ff190ef0922bb6803d363a4a214df5
ENCFF169UVC.tabix.bed.gz.tbi 141.64 KB 2a2267803a5a9181a0271c64d1eba072
genomic_resource.yaml 1.78 KB 885ec4a559a3004c63cf7a6ec630f05a
statistics/