Histone_ChIP-seq_ENCSR052WRV
Histone_ChIP-seq ENCSR052WRV [biosample_summary="Homo sapiens DOHH2" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR052WRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR052WRV [biosamplesummary="Homo sapiens DOHH2" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN169FCZ|/analyses/ENCAN169FCZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF067ZVJ|/files/ENCFF067ZVJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF067ZVJ|/files/ENCFF067ZVJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.37. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR052WRV | float |
Histone_ChIP-seq_ENCSR052WRV |
Histone_ChIP-seq ENCSR052WRV [biosample_summary="Homo sapiens DOHH2" and target="H3K4me3"]
|
|
[1.65, 74.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF897GSA.bed.gz | 1.28 MB | f29d88871da9a940bcc482ac133dbc6e |
| ENCFF897GSA.bed.gz.dvc | 101.0 B | 028a91597546a9d44e10e5f3532d4389 |
| ENCFF897GSA.tabix.bed.gz | 547.43 KB | 92e79befac8587a836a0aecee46af1b9 |
| ENCFF897GSA.tabix.bed.gz.dvc | 106.0 B | c35c609227330a2ffbe5ba959ad22018 |
| ENCFF897GSA.tabix.bed.gz.tbi | 183.19 KB | d02c03b2119cda6b8019c9b917d90e04 |
| ENCFF897GSA.tabix.bed.gz.tbi.dvc | 110.0 B | 994a66776d0f8c996b9c0cc5a3ded9cb |
| genomic_resource.yaml | 2.66 KB | e91d9a08caa1a509b05ebd9364c3621e |
| genomic_resource_original.yaml | 2.55 KB | a577814ecf93ae2668c27210295a9776 |
| statistics/ |