Resource
| Id | Histone_ChIP-seq/ENCSR051VDI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR051VDI [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (27 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN165UHD|/analyses/ENCAN165UHD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF571MJE|/files/ENCFF571MJE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 28756613 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR051VDI | float |
Histone_ChIP-seq_ENCSR051VDI |
Histone_ChIP-seq ENCSR051VDI [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K79me2"]
|
 |
[1.88, 25.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 96973405 | 3.01% | 164262 |
| chr1 | 8596194 | 3.45% | 14780 |
| chr2 | 7692194 | 3.18% | 12632 |
| chr3 | 6656709 | 3.36% | 10784 |
| chr4 | 4092944 | 2.15% | 7115 |
| chr5 | 4894821 | 2.70% | 8023 |
| chr6 | 5751750 | 3.37% | 9703 |
| chr7 | 5113591 | 3.21% | 9047 |
| chr8 | 4013854 | 2.77% | 6404 |
| chr9 | 4048127 | 2.93% | 6574 |
| chr9_KI270718v1_random | 259 | 0.68% | 1 |
| chr10 | 4846952 | 3.62% | 7943 |
| chr11 | 4541382 | 3.36% | 7708 |
| chr12 | 4891871 | 3.67% | 8529 |
| chr13 | 2195689 | 1.92% | 3443 |
| chr14 | 3512607 | 3.28% | 6167 |
| chr15 | 3281964 | 3.22% | 5651 |
| chr16 | 4233201 | 4.69% | 7220 |
| chr17 | 4329422 | 5.20% | 7760 |
| chr18 | 1937104 | 2.41% | 3262 |
| chr19 | 4407837 | 7.52% | 7596 |
| chr20 | 2799790 | 4.34% | 4494 |
| chr21 | 998192 | 2.14% | 1639 |
| chr22 | 2641151 | 5.20% | 4464 |
| chrUn_GL000219v1 | 329 | 0.18% | 2 |
| chrX | 1495471 | 0.96% | 3321 |
| 3341 contigs with no values (186087248 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 164262 | 85 | 24547 | 590.36 | 372 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF571UMT.bed.gz | 3.26 MB | b66dd21a747d2e0fb132f0eaa4e31361 |
| ENCFF571UMT.tabix.bed.gz | 1.55 MB | 5847a38ad9eb58ce9a781106ed94902e |
| ENCFF571UMT.tabix.bed.gz.tbi | 147.19 KB | 1ae2e7a1fa3636d2053d551341e5e1d6 |
| genomic_resource.yaml | 2.04 KB | a11c25a8534d9defd5a0ac642731a62a |
| statistics/ |