Resource
| Id | Histone_ChIP-seq/ENCSR050FLB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR050FLB [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN328ESU|/analyses/ENCAN328ESU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF865YIK|/files/ENCFF865YIK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 22957312 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF377CRP|/files/ENCFF377CRP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 34225481 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR050FLB | float |
Histone_ChIP-seq_ENCSR050FLB |
Histone_ChIP-seq ENCSR050FLB [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"]
|
 |
[1.49, 28.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61671231 | 1.92% | 94674 |
| chr1 | 6380487 | 2.56% | 9565 |
| chr1_KI270709v1_random | 561 | 0.84% | 1 |
| chr1_KI270712v1_random | 2038 | 1.16% | 3 |
| chr1_KI270713v1_random | 245 | 0.60% | 1 |
| chr2 | 4554920 | 1.88% | 7237 |
| chr3 | 3059149 | 1.54% | 4994 |
| chr4 | 1904873 | 1.00% | 3251 |
| chr4_GL000008v2_random | 1418 | 0.68% | 2 |
| chr5 | 2689025 | 1.48% | 4394 |
| chr6 | 2952647 | 1.73% | 5002 |
| chr7 | 2745620 | 1.72% | 4430 |
| chr8 | 2401372 | 1.65% | 3857 |
| chr9 | 2910618 | 2.10% | 4327 |
| chr9_KI270718v1_random | 345 | 0.91% | 1 |
| chr9_KI270719v1_random | 562 | 0.32% | 1 |
| chr10 | 2997705 | 2.24% | 4598 |
| chr11 | 3700658 | 2.74% | 5391 |
| chr12 | 2999709 | 2.25% | 4772 |
| chr13 | 1173742 | 1.03% | 2019 |
| chr14 | 1981104 | 1.85% | 3030 |
| chr14_GL000194v1_random | 847 | 0.44% | 2 |
| chr15 | 2283521 | 2.24% | 3615 |
| chr16 | 2784309 | 3.08% | 4063 |
| chr16_KI270728v1_random | 666 | 0.04% | 2 |
| chr17 | 4433810 | 5.33% | 6021 |
| chr17_GL000205v2_random | 1599 | 0.86% | 1 |
| chr17_KI270729v1_random | 1973 | 0.70% | 4 |
| chr17_KI270730v1_random | 2249 | 2.00% | 5 |
| chr18 | 1086413 | 1.35% | 1793 |
| chr19 | 3792750 | 6.47% | 5048 |
| chr20 | 1895273 | 2.94% | 2951 |
| chr21 | 700163 | 1.50% | 1098 |
| chr22 | 1927151 | 3.79% | 2624 |
| chr22_KI270733v1_random | 3052 | 1.70% | 6 |
| chr22_KI270735v1_random | 1133 | 2.65% | 2 |
| chr22_KI270736v1_random | 7201 | 3.96% | 8 |
| chrUn_GL000195v1 | 1012 | 0.55% | 2 |
| chrUn_GL000214v1 | 344 | 0.25% | 1 |
| chrUn_GL000216v2 | 352 | 0.20% | 1 |
| chrUn_GL000219v1 | 4329 | 2.42% | 8 |
| chrUn_KI270435v1 | 1012 | 1.09% | 1 |
| chrUn_KI270438v1 | 1221 | 1.09% | 2 |
| chrUn_KI270442v1 | 3912 | 1.00% | 7 |
| chrUn_KI270519v1 | 816 | 0.59% | 1 |
| chrUn_KI270589v1 | 1749 | 3.93% | 3 |
| chrUn_KI270591v1 | 583 | 10.06% | 1 |
| chrUn_KI270744v1 | 324 | 0.19% | 1 |
| chrUn_KI270754v1 | 416 | 1.04% | 1 |
| chrX | 267860 | 0.17% | 507 |
| chrY | 8393 | 0.01% | 19 |
| 3316 contigs with no values (123650089 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94674 | 245 | 9798 | 651.41 | 499 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF420LJI.bed.gz | 1.81 MB | ba641d6e35768fc357d8da9c025e18c8 |
| ENCFF420LJI.tabix.bed.gz | 956.29 KB | a2c3746fd56e3a1d8a8edad3b8ca60e3 |
| ENCFF420LJI.tabix.bed.gz.tbi | 277.91 KB | 03cdb95f2b69a0524c1f6c8ae4e2b83e |
| genomic_resource.yaml | 2.44 KB | 6113be8776b57d67e599cc721ff0f2da |
| statistics/ |