Resource

Id Histone_ChIP-seq/ENCSR048RSQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR048RSQ [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR048RSQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:21.457396+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR048RSQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR048RSQ float

Histone_ChIP-seq_ENCSR048RSQ
Histone_ChIP-seq ENCSR048RSQ [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR048RSQ [1.45, 24]
n
237,254,994
mean
8.03
sd
4.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2372549947.37% 172706
chr1 22347559 8.98% 16037
chr1_KI270706v1_random 535 0.31% 2
chr1_KI270712v1_random 1409 0.80% 2
chr1_KI270713v1_random 8684 21.31% 11
chr1_KI270714v1_random 1050 2.52% 1
chr2 18513756 7.64% 13910
chr3 13188287 6.65% 10255
chr3_GL000221v1_random 3148 2.03% 6
chr4 8967855 4.71% 7226
chr4_GL000008v2_random 419 0.20% 1
chr5 11808523 6.50% 8831
chr6 12138230 7.11% 9104
chr7 11712662 7.35% 8943
chr8 10913831 7.52% 7947
chr9 10361730 7.49% 7395
chr9_KI270718v1_random 252 0.66% 1
chr9_KI270719v1_random 309 0.17% 1
chr10 12223523 9.14% 8926
chr11 11566200 8.56% 8195
chr11_KI270721v1_random 1018 1.01% 3
chr12 10914958 8.19% 7808
chr13 5489515 4.80% 4398
chr14 7749764 7.24% 5393
chr14_GL000009v2_random 1704 0.84% 3
chr14_GL000194v1_random 2241 1.17% 3
chr14_GL000225v1_random 1371 0.65% 3
chr14_KI270723v1_random 492 1.29% 1
chr14_KI270724v1_random 341 0.86% 1
chr14_KI270726v1_random 2139 4.89% 3
chr15 7899394 7.75% 5768
chr15_KI270727v1_random 2830 0.63% 6
chr16 10157010 11.24% 6889
chr16_KI270728v1_random 2925 0.16% 4
chr17 13151886 15.80% 8377
chr17_GL000205v2_random 16928 9.12% 15
chr17_KI270729v1_random 850 0.30% 1
chr18 4832904 6.01% 3793
chr19 9817651 16.75% 6447
chr20 8006679 12.42% 5598
chr21 3517759 7.53% 2471
chr22 6817747 13.42% 4423
chr22_KI270731v1_random 1714 1.14% 3
chr22_KI270733v1_random 6170 3.43% 12
chr22_KI270734v1_random 1207 0.73% 3
chrUn_GL000195v1 3366 1.84% 6
chrUn_GL000214v1 955 0.69% 3
chrUn_GL000216v2 1370 0.78% 1
chrUn_GL000219v1 11563 6.45% 11
chrUn_GL000220v1 693 0.43% 2
chrUn_GL000224v1 1295 0.72% 2
chrUn_KI270438v1 1066 0.95% 3
chrUn_KI270442v1 1447 0.37% 2
chrUn_KI270519v1 2327 1.68% 3
chrUn_KI270742v1 836 0.45% 2
chrUn_KI270744v1 5574 3.31% 4
chrUn_KI270751v1 1188 0.79% 2
chrUn_KI270753v1 3458 5.49% 3
chrUn_KI270755v1 266 0.72% 1
chrX 5060248 3.24% 4435
chrY 4183 0.01% 6
3306 contigs with no values (121688204 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 172706 250 51755 1373.75 802
global segment-length histogram

Files

Filename Size md5
ENCFF038MVX.bed.gz 3.84 MB 9f5a3d6e69e3ee96e2f0eb8374cd8f41
ENCFF038MVX.tabix.bed.gz 1.75 MB 5a9a163b9319d0a0df0487b0ecaf0dc8
ENCFF038MVX.tabix.bed.gz.tbi 394.36 KB c99f5fca2797cd34f4883d89af0fb1fc
genomic_resource.yaml 3.12 KB 4083aa5f78f6ee37cd6499d2b417fa1a
statistics/