Histone_ChIP-seq_ENCSR047TJL
Histone_ChIP-seq ENCSR047TJL [biosample_summary="Homo sapiens H9" and target="H3K56ac"]
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| Id: | Histone_ChIP-seq/ENCSR047TJL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR047TJL [biosamplesummary="Homo sapiens H9" and target="H3K56ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN145RCZ|/analyses/ENCAN145RCZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN145RCZ|/analyses/ENCAN145RCZ/} has in progress subobject document {7af2359c-28ac-485c-b998-02cb70761546|/documents/7af2359c-28ac-485c-b998-02cb70761546/} audit_warning: Processed alignments file {ENCFF685QVN|/files/ENCFF685QVN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15161003 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF345SVV|/files/ENCFF345SVV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14957913 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF685QVN|/files/ENCFF685QVN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF685QVN|/files/ENCFF685QVN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF345SVV|/files/ENCFF345SVV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF345SVV|/files/ENCFF345SVV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR047TJL | float |
Histone_ChIP-seq_ENCSR047TJL |
Histone_ChIP-seq ENCSR047TJL [biosample_summary="Homo sapiens H9" and target="H3K56ac"]
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[1.72, 13.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF459XPD.bed.gz | 72.64 KB | 20a33daf8405ee14d59307c26485dc69 |
| ENCFF459XPD.bed.gz.dvc | 99.0 B | 680cc92ee983ce9ee7142cc24b10ef79 |
| ENCFF459XPD.tabix.bed.gz | 35.62 KB | 3e3276f61b1670bece2422d9b36748b1 |
| ENCFF459XPD.tabix.bed.gz.dvc | 105.0 B | 3997af44ba7690791460b1dc4d7c74a4 |
| ENCFF459XPD.tabix.bed.gz.tbi | 35.42 KB | d965988f9cec021cfe0a234746615e74 |
| ENCFF459XPD.tabix.bed.gz.tbi.dvc | 109.0 B | 77d5e47f55ce97a0d36687cd142fd223 |
| genomic_resource.yaml | 5.22 KB | 79bc516396a0f604df01905b582e78ae |
| genomic_resource_original.yaml | 5.11 KB | 8a1f100d30f7cd87d064b155d0f049cc |
| statistics/ |