Histone_ChIP-seq_ENCSR045QJH
Histone_ChIP-seq ENCSR045QJH [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR045QJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR045QJH [biosamplesummary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN316MCW|/analyses/ENCAN316MCW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF174ZXA|/files/ENCFF174ZXA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12353105 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF987LBK|/files/ENCFF987LBK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF987LBK|/files/ENCFF987LBK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF174ZXA|/files/ENCFF174ZXA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF174ZXA|/files/ENCFF174ZXA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR045QJH | float |
Histone_ChIP-seq_ENCSR045QJH |
Histone_ChIP-seq ENCSR045QJH [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K4me3"]
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[1.5, 75.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786UIZ.bed.gz | 916.07 KB | 5180a6e68ec5ebc470b06e19e45fbb73 |
| ENCFF786UIZ.bed.gz.dvc | 100.0 B | c2f1f60c7ed4ba28a65e4294b5507bd6 |
| ENCFF786UIZ.tabix.bed.gz | 400.26 KB | e65745dc6158518121c0c29718d05e7f |
| ENCFF786UIZ.tabix.bed.gz.dvc | 106.0 B | f3c6e9b2d5111634c9fa4be89d44176b |
| ENCFF786UIZ.tabix.bed.gz.tbi | 178.97 KB | 6ed7dbb566a5c8b17853fb5967f38e88 |
| ENCFF786UIZ.tabix.bed.gz.tbi.dvc | 110.0 B | 633ae388192422100a2457ca516d6795 |
| genomic_resource.yaml | 4.63 KB | 5c9981fbdf1f0228b010b4bb27d388ee |
| genomic_resource_original.yaml | 4.49 KB | 4710c8c9b01a5f91dd5d872c85a035ae |
| statistics/ |