Histone_ChIP-seq_ENCSR045HLL
Histone_ChIP-seq ENCSR045HLL [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR045HLL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR045HLL [biosamplesummary="Homo sapiens neural cell originated from H1" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN145XCI|/analyses/ENCAN145XCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF454FGI|/files/ENCFF454FGI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF454FGI|/files/ENCFF454FGI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR045HLL | float |
Histone_ChIP-seq_ENCSR045HLL |
Histone_ChIP-seq ENCSR045HLL [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K4me2"]
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[1.62, 10.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF748NZC.bed.gz | 1.03 MB | a3acfe1ee16446899ed31cd2a47ace81 |
| ENCFF748NZC.bed.gz.dvc | 101.0 B | 2a30294b5a06805de0dee1c0e2a8cd04 |
| ENCFF748NZC.tabix.bed.gz | 470.43 KB | d10ff7e1e99097e9a01f8358f5952f19 |
| ENCFF748NZC.tabix.bed.gz.dvc | 106.0 B | 457857d5f0b5285fd384091751c4535d |
| ENCFF748NZC.tabix.bed.gz.tbi | 210.22 KB | 96c892abe1d0244fd6d9ad90ae37a8b7 |
| ENCFF748NZC.tabix.bed.gz.tbi.dvc | 110.0 B | 4584edf3e262290c28dd9447fa584cf4 |
| genomic_resource.yaml | 2.84 KB | 19af9112572222e2a08033863cf56aaf |
| genomic_resource_original.yaml | 2.71 KB | 380e1fd464cb243c483ed370f1ed14e5 |
| statistics/ |