Histone_ChIP-seq_ENCSR044WCY
Histone_ChIP-seq ENCSR044WCY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR044WCY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR044WCY [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN032YMB|/analyses/ENCAN032YMB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF838MIE|/files/ENCFF838MIE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 34034376 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF225KJN|/files/ENCFF225KJN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 35937474 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF168RVH|/files/ENCFF168RVH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF168RVH|/files/ENCFF168RVH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR044WCY | float |
Histone_ChIP-seq_ENCSR044WCY |
Histone_ChIP-seq ENCSR044WCY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9me3"]
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[1.46, 22.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF085ZRB.bed.gz | 2.37 MB | 6e107e58d5ff67be599fab11b7ea9967 |
| ENCFF085ZRB.bed.gz.dvc | 101.0 B | 1f0c3b23c049a290ee9e9c744e2f7b48 |
| ENCFF085ZRB.tabix.bed.gz | 1.16 MB | 5c6523467e7e85b9e910fabe7526f773 |
| ENCFF085ZRB.tabix.bed.gz.dvc | 107.0 B | 62d1032ff93c7066bbeb753645b36544 |
| ENCFF085ZRB.tabix.bed.gz.tbi | 440.22 KB | 762e0f67249bf551801dd91486086e3a |
| ENCFF085ZRB.tabix.bed.gz.tbi.dvc | 110.0 B | 0a0b54e033affdea749a0feaaae02540 |
| genomic_resource.yaml | 3.69 KB | 55970c63c8fd10bd8d7a8c9f82936783 |
| genomic_resource_original.yaml | 3.56 KB | 1e112ccd638a3040fe77bd56ac5e69e1 |
| statistics/ |