Resource
| Id | Histone_ChIP-seq/ENCSR043VGU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR043VGU [biosample_summary="Homo sapiens H9" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF190YKE|/files/ENCFF190YKE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3439187 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN342BVY|/analyses/ENCAN342BVY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF955YGZ|/files/ENCFF955YGZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8056387 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR043VGU | float |
Histone_ChIP-seq_ENCSR043VGU |
Histone_ChIP-seq ENCSR043VGU [biosample_summary="Homo sapiens H9" and target="H3K4me3"]
|
 |
[2.21, 100] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31612781 | 0.98% | 38062 |
| chr1 | 3075455 | 1.24% | 3737 |
| chr2 | 2114733 | 0.87% | 2509 |
| chr3 | 1740578 | 0.88% | 1944 |
| chr4 | 1291274 | 0.68% | 1479 |
| chr5 | 1555458 | 0.86% | 1834 |
| chr6 | 1988265 | 1.16% | 2229 |
| chr7 | 1507668 | 0.95% | 1872 |
| chr8 | 1196573 | 0.82% | 1340 |
| chr9 | 1249471 | 0.90% | 1541 |
| chr10 | 1294627 | 0.97% | 1531 |
| chr11 | 1686548 | 1.25% | 1997 |
| chr12 | 1617578 | 1.21% | 1855 |
| chr13 | 664564 | 0.58% | 774 |
| chr14 | 1060755 | 0.99% | 1232 |
| chr15 | 1004973 | 0.99% | 1212 |
| chr16 | 1222118 | 1.35% | 1509 |
| chr17 | 1747373 | 2.10% | 2188 |
| chr18 | 552996 | 0.69% | 640 |
| chr19 | 2109601 | 3.60% | 2919 |
| chr20 | 831938 | 1.29% | 1052 |
| chr21 | 301710 | 0.65% | 355 |
| chr22 | 622308 | 1.22% | 816 |
| chrX | 1174990 | 0.75% | 1495 |
| chrY | 1227 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38062 | 125 | 7482 | 830.56 | 620 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF719ESQ.bed.gz | 977.66 KB | 03bd11014572dc9a09c6ad6f55ee39e9 |
| ENCFF719ESQ.tabix.bed.gz | 420.39 KB | 2b9c351508e9918bbecdba1062fea71c |
| ENCFF719ESQ.tabix.bed.gz.tbi | 159.44 KB | d4c763d77ab25a04daa7b41056fc16c1 |
| genomic_resource.yaml | 2.54 KB | a5324f9e418522cc3ff333eac4a4c3b9 |
| statistics/ |