type: position_score
table:
  filename: ENCFF719ESQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR043VGU
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR043VGU [TISSUE: Homo sapiens H9, TARGET: H3K4me3]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: replicated peaks\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF190YKE|/files/ENCFF190YKE/} processed by ChIP-seq ENCODE3\
    \ hg19 pipeline has 3439187 usable fragments. The minimum ENCODE standard for\
    \ each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated\
    \ as a narrow histone mark is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/})\n\n**audit\\_internal\\_action**: Archived\
    \ analysis {ENCAN342BVY|/analyses/ENCAN342BVY/} has in progress subobject quality\
    \ standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\n\
    **audit\\_not\\_compliant**: Processed alignments file {ENCFF955YGZ|/files/ENCFF955YGZ/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 8056387 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me3-human and investigated as a narrow histone mark is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR043VGU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens H9
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003045/
    perturbed: false
    doi: 10.17989/ENCSR043VGU
    date_created: '2015-09-16T19:16:06.217524+00:00'
    date_released: '2013-07-31'
    submitter_comment: An error has been identified on one more protocol documents
      in this experiment regarding the antibody specifications. Please refer to the
      external references for the correct information.
    target: H3K4me3
