Histone_ChIP-seq_ENCSR043SJS
Histone_ChIP-seq ENCSR043SJS [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR043SJS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR043SJS [biosamplesummary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN913CGU|/analyses/ENCAN913CGU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF159RTQ|/files/ENCFF159RTQ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF159RTQ|/files/ENCFF159RTQ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.12. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF150WVO|/files/ENCFF150WVO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR043SJS | float |
Histone_ChIP-seq_ENCSR043SJS |
Histone_ChIP-seq ENCSR043SJS [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K9me3"]
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[1.6, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF235OJE.bed.gz | 205.68 KB | fb67421f4d421e0c5a9872389665ddf3 |
| ENCFF235OJE.bed.gz.dvc | 100.0 B | 2e5523e9992f30348493373620c319b8 |
| ENCFF235OJE.tabix.bed.gz | 101.82 KB | 2a8eb55981448999fc6188eb9d40e204 |
| ENCFF235OJE.tabix.bed.gz.dvc | 106.0 B | 7773ccaf826be2542a56f61a4f63304c |
| ENCFF235OJE.tabix.bed.gz.tbi | 63.72 KB | bf2b09b41ee06383605a1e68414c4bf1 |
| ENCFF235OJE.tabix.bed.gz.tbi.dvc | 109.0 B | 70f9c826d123318c8f5af73601607ca9 |
| genomic_resource.yaml | 3.45 KB | d90d4c507304e1d920ef1826350ba787 |
| genomic_resource_original.yaml | 3.31 KB | 14c31d8db1bede37b81b64e7d205f9dd |
| statistics/ |