Resource
| Id | Histone_ChIP-seq/ENCSR042ORP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR042ORP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN029MLN|/analyses/ENCAN029MLN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF313RTZ|/files/ENCFF313RTZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19985208 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR042ORP | float |
Histone_ChIP-seq_ENCSR042ORP |
Histone_ChIP-seq ENCSR042ORP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K36me3"]
|
 |
[1.79, 13.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40882219 | 1.27% | 54906 |
| chr1 | 4155489 | 1.67% | 5602 |
| chr2 | 2337660 | 0.97% | 3464 |
| chr3 | 2210724 | 1.11% | 3073 |
| chr4 | 1030786 | 0.54% | 1626 |
| chr5 | 1433054 | 0.79% | 2121 |
| chr6 | 1468551 | 0.86% | 2026 |
| chr7 | 1677058 | 1.05% | 2393 |
| chr8 | 1051087 | 0.72% | 1566 |
| chr9 | 2021110 | 1.46% | 2553 |
| chr10 | 1404126 | 1.05% | 2034 |
| chr11 | 2467116 | 1.83% | 3167 |
| chr12 | 2398150 | 1.80% | 3103 |
| chr13 | 484475 | 0.42% | 802 |
| chr14 | 1233529 | 1.15% | 1804 |
| chr15 | 1334928 | 1.31% | 1878 |
| chr16 | 2517528 | 2.79% | 3107 |
| chr17 | 3074915 | 3.69% | 3839 |
| chr18 | 393977 | 0.49% | 641 |
| chr19 | 4001229 | 6.83% | 4742 |
| chr20 | 1538880 | 2.39% | 1941 |
| chr21 | 532164 | 1.14% | 697 |
| chr22 | 1651338 | 3.25% | 1914 |
| chrX | 456084 | 0.29% | 797 |
| chrY | 8261 | 0.01% | 16 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54906 | 220 | 9761 | 744.59 | 584 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF781LEQ.bed.gz | 1.03 MB | 98d33753b226540916330ecf6f89442d |
| ENCFF781LEQ.tabix.bed.gz | 538.37 KB | d1fe7e87b129cd9b966c7206323346f9 |
| ENCFF781LEQ.tabix.bed.gz.tbi | 142.57 KB | 0d5b5fd5355627eeb29bd98e7a646b21 |
| genomic_resource.yaml | 2.05 KB | 064f2de81e18d495431f998b20eb0f34 |
| statistics/ |