Resource

Id Histone_ChIP-seq/ENCSR042ITNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR042ITN [biosample_summary="Homo sapiens cerebellum tissue male adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR042ITN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002037/
  • biosample_summary: Homo sapiens cerebellum tissue male adult (53 years)
  • date_created: 2017-03-22T16:16:43.146470+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR042ITN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR042ITN float

Histone_ChIP-seq_ENCSR042ITN
Histone_ChIP-seq ENCSR042ITN [biosample_summary="Homo sapiens cerebellum tissue male adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR042ITN [1.59, 47]
n
27,546,984
mean
14.5
sd
7.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 275469840.86% 24718
chr1 2599940 1.04% 2418
chr1_KI270712v1_random 2416 1.37% 4
chr2 1685237 0.70% 1532
chr3 1344795 0.68% 1215
chr3_GL000221v1_random 458 0.29% 1
chr4 976581 0.51% 864
chr5 1166921 0.64% 1067
chr6 1285732 0.75% 1212
chr7 1357623 0.85% 1223
chr8 1027704 0.71% 883
chr9 1228143 0.89% 1065
chr10 1088449 0.81% 980
chr11 1623843 1.20% 1389
chr12 1298698 0.97% 1197
chr13 529490 0.46% 479
chr14 832042 0.78% 781
chr15 823949 0.81% 752
chr16 1404559 1.55% 1168
chr17 1936740 2.33% 1675
chr17_GL000205v2_random 2474 1.33% 2
chr18 426905 0.53% 400
chr19 2223750 3.79% 1978
chr20 828568 1.29% 732
chr21 246884 0.53% 227
chr22 810258 1.59% 703
chr22_KI270732v1_random 563 1.36% 1
chr22_KI270733v1_random 497 0.28% 1
chrUn_GL000195v1 747 0.41% 1
chrUn_GL000219v1 2940 1.64% 2
chrUn_KI270743v1 424 0.20% 1
chrUn_KI270749v1 335 0.21% 1
chrX 770823 0.49% 743
chrY 18496 0.03% 21
3333 contigs with no values (127607228 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24718 260 10387 1114.45 971
global segment-length histogram

Files

Filename Size md5
ENCFF127EFK.bed.gz 693.95 KB b6cad01bd079a87ddde7a9944a9d5b35
ENCFF127EFK.tabix.bed.gz 289.21 KB 3fd6f4ee0f6af761a62eb445a8892602
ENCFF127EFK.tabix.bed.gz.tbi 143.04 KB 01193ecaa2d011aaad3d0b38583a3a98
genomic_resource.yaml 1.98 KB 91973a62838167c5d986a543a8cda462
statistics/