Resource

Id Histone_ChIP-seq/ENCSR040TUScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR040TUS [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (81 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR040TUS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002305/
  • biosample_summary: Homo sapiens layer of hippocampus tissue male adult (81 years)
  • date_created: 2015-09-15T19:49:17.313536+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR040TUS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR040TUS float

Histone_ChIP-seq_ENCSR040TUS
Histone_ChIP-seq ENCSR040TUS [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (81 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR040TUS [1.94, 18.7]
n
53,759,769
mean
5.97
sd
1.98

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 537597691.67% 60707
chr1 5824491 2.34% 6255
chr2 4107759 1.70% 4700
chr3 3125452 1.58% 3632
chr4 1807274 0.95% 2264
chr5 2609344 1.44% 3181
chr6 2711955 1.59% 3288
chr7 2364942 1.48% 2854
chr8 1862509 1.28% 2280
chr9 2841586 2.05% 3043
chr10 3115640 2.33% 3373
chr11 3613211 2.67% 3924
chr12 2337093 1.75% 2680
chr13 1072047 0.94% 1339
chr14 1909010 1.78% 2097
chr15 1985829 1.95% 2239
chr16 2038691 2.26% 2263
chr17 3203048 3.85% 3306
chr18 989648 1.23% 1203
chr19 2117932 3.61% 2222
chr20 1726637 2.68% 1889
chr21 518264 1.11% 599
chr22 1473070 2.90% 1522
chrX 400294 0.26% 548
chrY 4043 0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60707 270 13412 885.56 722
global segment-length histogram

Files

Filename Size md5
ENCFF598SLA.bed.gz 1.12 MB 7b1eac89accf2df91f84e5423d451bb0
ENCFF598SLA.tabix.bed.gz 595.06 KB 21365dde27b47e56002429371b543bac
ENCFF598SLA.tabix.bed.gz.tbi 221.6 KB 5224cea5b089e462eb1402eba9bda4d4
genomic_resource.yaml 2.02 KB 64c76312e7097972172952a264580c53
statistics/