Resource
| Id | Histone_ChIP-seq/ENCSR035QNZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR035QNZ [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN781GSS|/analyses/ENCAN781GSS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN781GSS|/analyses/ENCAN781GSS/} has in progress subobject document {32691eab-d382-421a-866f-0077436c6173|/documents/32691eab-d382-421a-866f-0077436c6173/} audit_not_compliant: Processed unfiltered alignments file {ENCFF395BRY|/files/ENCFF395BRY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25788929 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR035QNZ | float |
Histone_ChIP-seq_ENCSR035QNZ |
Histone_ChIP-seq ENCSR035QNZ [biosample_summary="Homo sapiens pancreas tissue male adult (34 years)" and target="H3K9me3"]
|
 |
[2.04, 69.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 21520448 | 0.67% | 66895 |
| chr1 | 1278902 | 0.51% | 4077 |
| chr2 | 1467898 | 0.61% | 4708 |
| chr3 | 1210537 | 0.61% | 3914 |
| chr4 | 1558068 | 0.82% | 4976 |
| chr5 | 1594458 | 0.88% | 4764 |
| chr6 | 1077598 | 0.63% | 3470 |
| chr7 | 1393540 | 0.87% | 4249 |
| chr8 | 1251645 | 0.86% | 3885 |
| chr9 | 773122 | 0.56% | 2433 |
| chr10 | 965543 | 0.72% | 3035 |
| chr11 | 845781 | 0.63% | 2657 |
| chr12 | 1080412 | 0.81% | 3178 |
| chr13 | 699395 | 0.61% | 2292 |
| chr14 | 613555 | 0.57% | 1944 |
| chr15 | 508634 | 0.50% | 1443 |
| chr16 | 716660 | 0.79% | 2155 |
| chr17 | 428384 | 0.51% | 1320 |
| chr18 | 557518 | 0.69% | 1834 |
| chr19 | 1625920 | 2.77% | 4364 |
| chr20 | 563094 | 0.87% | 1672 |
| chr21 | 349493 | 0.75% | 1080 |
| chr22 | 289232 | 0.57% | 846 |
| chrX | 574290 | 0.37% | 2243 |
| chrY | 96769 | 0.17% | 356 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66895 | 145 | 8196 | 321.7 | 267 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF277RPZ.bed.gz | 1.19 MB | c7f51d01a2c4e592b56ddde3d7054011 |
| ENCFF277RPZ.tabix.bed.gz | 627.92 KB | e98a3572cca619aa4a470576410ae177 |
| ENCFF277RPZ.tabix.bed.gz.tbi | 318.53 KB | cac35a7ce6c777e1eaf88f2222feac89 |
| genomic_resource.yaml | 2.2 KB | 82a6acaf6254bc03e160bb9c6a6bd92f |
| statistics/ |