Resource

Id Histone_ChIP-seq/ENCSR035ONOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR035ONO [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR035ONO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000995/
  • biosample_summary: Homo sapiens uterus tissue female adult (53 years)
  • date_created: 2019-07-29T20:50:10.573733+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR035ONO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR035ONO float

Histone_ChIP-seq_ENCSR035ONO
Histone_ChIP-seq ENCSR035ONO [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR035ONO [1.31, 6.13]
n
13,218,243
mean
3.3
sd
0.554

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 132182430.41% 20269
chr1 1383620 0.56% 2073
chr2 1217601 0.50% 1850
chr3 1036633 0.52% 1580
chr4 671713 0.35% 1063
chr5 715368 0.39% 1111
chr6 790881 0.46% 1222
chr7 616412 0.39% 965
chr8 580678 0.40% 905
chr9 624423 0.45% 970
chr10 757855 0.57% 1148
chr11 680332 0.50% 1036
chr12 809866 0.61% 1203
chr13 323834 0.28% 486
chr14 508409 0.47% 755
chr15 495124 0.49% 770
chr16 266789 0.30% 422
chr17 493165 0.59% 758
chr18 231593 0.29% 378
chr19 224985 0.38% 373
chr20 297416 0.46% 453
chr21 210982 0.45% 322
chr22 225760 0.44% 344
chrM 13727 82.85% 6
chrX 41077 0.03% 76
3342 contigs with no values (186287931 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20269 205 7178 652.14 580
global segment-length histogram

Files

Filename Size md5
ENCFF553LMB.bed.gz 438.76 KB d2305713445feedc3efefdbe16798b8b
ENCFF553LMB.tabix.bed.gz 215.94 KB 8ddbc0533778d150f9b4c83dba72531f
ENCFF553LMB.tabix.bed.gz.tbi 113.71 KB 9d8c2253a0ad244fe1dfe2937883bf4a
genomic_resource.yaml 1.49 KB a35f7e3d492931d4cd08892349cd97fb
statistics/