Histone_ChIP-seq_ENCSR035DUS
Histone_ChIP-seq ENCSR035DUS [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR035DUS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR035DUS [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN072UNJ|/analyses/ENCAN072UNJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF282KEX|/files/ENCFF282KEX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24340214 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF181GEM|/files/ENCFF181GEM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23471944 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR035DUS | float |
Histone_ChIP-seq_ENCSR035DUS |
Histone_ChIP-seq ENCSR035DUS [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me1"]
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[1.58, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF399YHU.bed.gz | 3.63 MB | d1ba50a5d787536af1ac6dd3992c2201 |
| ENCFF399YHU.bed.gz.dvc | 101.0 B | 42945f3db847320d713dd3f87b8269ae |
| ENCFF399YHU.tabix.bed.gz | 1.67 MB | 1007e1981b093b83f2053d75089c00b5 |
| ENCFF399YHU.tabix.bed.gz.dvc | 107.0 B | 8193108b872c38170288c3624a7e0a9c |
| ENCFF399YHU.tabix.bed.gz.tbi | 423.07 KB | e3224e7f911a3fe26b83a12d6da40dd0 |
| ENCFF399YHU.tabix.bed.gz.tbi.dvc | 110.0 B | 1831fd5a8d592b4f595af93136062dc6 |
| genomic_resource.yaml | 2.45 KB | df42dd38fc374a2c3381115a3e113aac |
| genomic_resource_original.yaml | 2.31 KB | 3ca0ebbea42dea0de86cc793ee6961ae |
| statistics/ |