Histone_ChIP-seq_ENCSR034ZKE
Histone_ChIP-seq ENCSR034ZKE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR034ZKE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR034ZKE [biosamplesummary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN571JOP|/analyses/ENCAN571JOP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422CZO|/files/ENCFF422CZO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422CZO|/files/ENCFF422CZO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR034ZKE | float |
Histone_ChIP-seq_ENCSR034ZKE |
Histone_ChIP-seq ENCSR034ZKE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27ac"]
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[1.25, 75.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF190SES.bed.gz | 2.46 MB | 460d4684c9f2423349e63fd827560af0 |
| ENCFF190SES.bed.gz.dvc | 101.0 B | af81def693f97e8e77767dfda88cee9f |
| ENCFF190SES.tabix.bed.gz | 1.11 MB | 910d74a3050ad8ae9d3419eedebbd49c |
| ENCFF190SES.tabix.bed.gz.dvc | 107.0 B | 87c698f7477e947d5a21eacae85e16ba |
| ENCFF190SES.tabix.bed.gz.tbi | 283.58 KB | c45ac0d76bcd451029ed7a8d2e45745a |
| ENCFF190SES.tabix.bed.gz.tbi.dvc | 110.0 B | a3d2c1e493987cf00aa8977b83552144 |
| genomic_resource.yaml | 2.78 KB | 411c550149badeb131726a9d8ca5977c |
| genomic_resource_original.yaml | 2.63 KB | 961d2924e5bd1645832376202abcbcf4 |
| statistics/ |