Resource

Id Histone_ChIP-seq/ENCSR034RQVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR034RQV [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR034RQV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (65 years)
  • date_created: 2017-09-13T18:33:06.905825+00:00
  • date_released: 2017-12-05
  • doi: 10.17989/ENCSR034RQV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (65 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR034RQV float

Histone_ChIP-seq_ENCSR034RQV
Histone_ChIP-seq ENCSR034RQV [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR034RQV [1.65, 62.3]
n
63,446,242
mean
12.9
sd
9.93

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 634462421.97% 49354
chr1 5455152 2.19% 4585
chr2 4709862 1.94% 3608
chr3 4237263 2.14% 3169
chr4 2280867 1.20% 1935
chr5 3677288 2.03% 2662
chr6 3786778 2.22% 2786
chr7 3002146 1.88% 2246
chr8 2843125 1.96% 2098
chr9 2453790 1.77% 2082
chr10 3439767 2.57% 2417
chr11 3169428 2.35% 2574
chr12 3757753 2.82% 2618
chr13 1231957 1.08% 1106
chr14 2386114 2.23% 1678
chr15 1661832 1.63% 1475
chr16 2188549 2.42% 1847
chr17 3580733 4.30% 2773
chr18 1345651 1.67% 989
chr19 2949853 5.03% 2318
chr20 2056545 3.19% 1570
chr21 498161 1.07% 458
chr22 1250446 2.46% 1096
chrX 1475270 0.95% 1253
chrY 7912 0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49354 235 60039 1285.53 859
global segment-length histogram

Files

Filename Size md5
ENCFF110LKJ.bed.gz 1.15 MB 3328001d7d986759bc4c681add0e86c8
ENCFF110LKJ.tabix.bed.gz 535.75 KB 04c1f68f3b0072c5a61e526b0f867f26
ENCFF110LKJ.tabix.bed.gz.tbi 195.33 KB 04f49e012eaa3fc6a16f1eb19da58a85
genomic_resource.yaml 2.04 KB 333ac3ddb612613442860989609dbf8b
statistics/