Resource

Id Histone_ChIP-seq/ENCSR033OKScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR033OKS [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR033OKS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:53.859296+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR033OKS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR033OKS float

Histone_ChIP-seq_ENCSR033OKS
Histone_ChIP-seq ENCSR033OKS [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR033OKS [1.95, 58.3]
n
37,747,663
mean
17.6
sd
10.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 377476631.17% 30908
chr1 3793820 1.52% 3020
chr2 2575218 1.06% 2097
chr3 2141432 1.08% 1673
chr4 1539999 0.81% 1224
chr5 1872702 1.03% 1467
chr6 2348701 1.38% 1784
chr7 1793488 1.13% 1511
chr8 1427204 0.98% 1187
chr9 1614856 1.17% 1352
chr10 1747415 1.31% 1453
chr11 1714021 1.27% 1536
chr12 2047046 1.54% 1604
chr13 773025 0.68% 646
chr14 1304464 1.22% 990
chr15 1064258 1.04% 914
chr16 1423605 1.58% 1219
chr17 2172273 2.61% 1803
chr18 689267 0.86% 604
chr19 2469965 4.21% 2007
chr20 1015111 1.58% 823
chr21 332833 0.71% 294
chr22 820527 1.61% 737
chrX 1026963 0.66% 936
chrY 39470 0.07% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30908 215 31631 1221.29 941
global segment-length histogram

Files

Filename Size md5
ENCFF465VYA.bed.gz 774.93 KB b850c083e46122dc2dd57cc25bc524f0
ENCFF465VYA.tabix.bed.gz 344.91 KB 4a06c8b14839d543086acd0e50907c51
ENCFF465VYA.tabix.bed.gz.tbi 165.6 KB cc60b4e200e6d610e40e6b249cbb1a4f
genomic_resource.yaml 2.53 KB c0e4b72c15880a13b1841f51e80baae7
statistics/