| Id: | Histone_ChIP-seq/ENCSR032FUX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR032FUX [biosamplesummary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (81 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN264EJZ|/analyses/ENCAN264EJZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF615BTE|/files/ENCFF615BTE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26357485 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF615BTE|/files/ENCFF615BTE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF615BTE|/files/ENCFF615BTE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.26. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR032FUX | float |
Histone_ChIP-seq_ENCSR032FUX |
Histone_ChIP-seq ENCSR032FUX [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K4me1"]
|
 |
[1.31, 44.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF074FRO.bed.gz | 3.52 MB | c09ab86c15db0e38adbe6272db7ad08e |
| ENCFF074FRO.bed.gz.dvc | 101.0 B | 7ac7524ce13556ac53a0539b73688f27 |
| ENCFF074FRO.tabix.bed.gz | 1.62 MB | 02a33ce831fac6366bd5749301d4a159 |
| ENCFF074FRO.tabix.bed.gz.dvc | 107.0 B | 8662001854022d3142244c946e556af5 |
| ENCFF074FRO.tabix.bed.gz.tbi | 369.93 KB | 02d25e89805f5a39ba25bdcc3ab4914a |
| ENCFF074FRO.tabix.bed.gz.tbi.dvc | 110.0 B | ee94aa04058722a46696a43f653e3529 |
| genomic_resource.yaml | 3.43 KB | ee068cc4c378e8ca9e2b0b8560632a1c |
| genomic_resource_original.yaml | 3.25 KB | 4b51ca28b51b6d00d8370a8d3d5aa5b6 |
| statistics/ |