Histone_ChIP-seq_ENCSR032CAS
Histone_ChIP-seq ENCSR032CAS [biosample_summary="Homo sapiens brain microvascular endothelial cell" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR032CAS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR032CAS [biosamplesummary="Homo sapiens brain microvascular endothelial cell" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN826XZQ|/analyses/ENCAN826XZQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422LYM|/files/ENCFF422LYM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422LYM|/files/ENCFF422LYM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF220CLZ|/files/ENCFF220CLZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF220CLZ|/files/ENCFF220CLZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR032CAS | float |
Histone_ChIP-seq_ENCSR032CAS |
Histone_ChIP-seq ENCSR032CAS [biosample_summary="Homo sapiens brain microvascular endothelial cell" and target="H3K27me3"]
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[1.73, 9.19] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF732VIJ.bed.gz | 575.66 KB | 400f2a2c4577a91664d04e71cb092e59 |
| ENCFF732VIJ.bed.gz.dvc | 100.0 B | 46a0ed711a3274b6918de8a704443b9a |
| ENCFF732VIJ.tabix.bed.gz | 303.51 KB | 7d9e769970071dad0200e8e843affaf3 |
| ENCFF732VIJ.tabix.bed.gz.dvc | 106.0 B | 4fb9165bb5589e125ff7626e5f468a81 |
| ENCFF732VIJ.tabix.bed.gz.tbi | 86.65 KB | 08fceea1a21d7cffb9525dfe1ed37f19 |
| ENCFF732VIJ.tabix.bed.gz.tbi.dvc | 109.0 B | 28e05722d650d18dde6031e1c8a3a2b7 |
| genomic_resource.yaml | 4.09 KB | d3fa5c76eae34219fcd569849b188fd7 |
| genomic_resource_original.yaml | 3.95 KB | 5c42bb27846d87b287cd5b461101a6dc |
| statistics/ |