Resource
| Id | Histone_ChIP-seq/ENCSR031SHV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR031SHV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (54 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN764FLK|/analyses/ENCAN764FLK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF802CWZ|/files/ENCFF802CWZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF802CWZ|/files/ENCFF802CWZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.12. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR031SHV | float |
Histone_ChIP-seq_ENCSR031SHV |
Histone_ChIP-seq ENCSR031SHV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (54 years)" and target="H3K4me3"]
|
 |
[1.92, 101] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55261339 | 1.72% | 31537 |
| chr1 | 5419737 | 2.18% | 3046 |
| chr2 | 3730969 | 1.54% | 2138 |
| chr3 | 3180595 | 1.60% | 1779 |
| chr4 | 2328354 | 1.22% | 1345 |
| chr5 | 2703789 | 1.49% | 1530 |
| chr6 | 3197980 | 1.87% | 1815 |
| chr7 | 2733179 | 1.72% | 1617 |
| chr8 | 2156216 | 1.49% | 1261 |
| chr9 | 2359135 | 1.70% | 1380 |
| chr10 | 2457505 | 1.84% | 1432 |
| chr11 | 2936566 | 2.17% | 1590 |
| chr12 | 2948187 | 2.21% | 1622 |
| chr13 | 1229978 | 1.08% | 778 |
| chr14 | 1679544 | 1.57% | 936 |
| chr15 | 1786857 | 1.75% | 1031 |
| chr16 | 2104445 | 2.33% | 1228 |
| chr17 | 3122920 | 3.75% | 1718 |
| chr18 | 1016618 | 1.26% | 617 |
| chr19 | 3369548 | 5.75% | 1903 |
| chr20 | 1431789 | 2.22% | 820 |
| chr21 | 537220 | 1.15% | 338 |
| chr22 | 1207764 | 2.38% | 701 |
| chrX | 1565763 | 1.00% | 884 |
| chrY | 56681 | 0.10% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31537 | 220 | 24256 | 1752.27 | 1368 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF577TDE.bed.gz | 840.56 KB | eff7798f4801e9811744404165c58434 |
| ENCFF577TDE.tabix.bed.gz | 364.53 KB | adc4361e73bb0db7dadabc4479cdae38 |
| ENCFF577TDE.tabix.bed.gz.tbi | 192.3 KB | c54a3935a3879000711926bdd8b2e607 |
| genomic_resource.yaml | 2.79 KB | 2b33140f7ed1a75dde5ebfc361925663 |
| statistics/ |