Resource

Id Histone_ChIP-seq/ENCSR028INDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR028IND [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR028IND
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:16.303307+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR028IND
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR028IND float

Histone_ChIP-seq_ENCSR028IND
Histone_ChIP-seq ENCSR028IND [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR028IND [1.69, 31.8]
n
121,508,392
mean
6.55
sd
5.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1215083923.78% 162646
chr1 12381634 4.97% 15650
chr2 7686302 3.17% 10679
chr3 6120141 3.09% 9030
chr4 3451012 1.81% 4295
chr5 5912627 3.26% 7977
chr6 5670504 3.32% 7626
chr7 5068315 3.18% 6861
chr8 3775783 2.60% 5333
chr9 5700460 4.12% 7420
chr10 6534286 4.88% 8834
chr11 8034272 5.95% 10471
chr12 5296542 3.97% 6943
chr13 1850101 1.62% 2675
chr14 3982006 3.72% 5138
chr15 4349097 4.26% 5957
chr16 5086449 5.63% 6735
chr17 7494416 9.00% 8593
chr18 2018361 2.51% 3009
chr19 4170066 7.11% 5086
chr20 6341758 9.84% 7728
chr21 1264630 2.71% 1863
chr22 3698550 7.28% 4695
chrX 5621080 3.60% 10048
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162646 175 140955 747.07 455
global segment-length histogram

Files

Filename Size md5
ENCFF997LQL.bed.gz 3.04 MB 4766d4db3f2d4e939c913f46320fd021
ENCFF997LQL.tabix.bed.gz 1.53 MB 68820dd68bce6a833d68804daab92cd2
ENCFF997LQL.tabix.bed.gz.tbi 248.2 KB 6319127a9a940f322a44cca3ece5c963
genomic_resource.yaml 1.61 KB 2b76fdd9addceb808e89a997debbed0a
statistics/