Resource
| Id | Histone_ChIP-seq/ENCSR027BAJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR027BAJ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN082ZXY|/analyses/ENCAN082ZXY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF764CNM|/files/ENCFF764CNM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26937160 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR027BAJ | float |
Histone_ChIP-seq_ENCSR027BAJ |
Histone_ChIP-seq ENCSR027BAJ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"]
|
 |
[1.36, 24] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58179029 | 1.81% | 91304 |
| chr1 | 6074069 | 2.44% | 9535 |
| chr2 | 3937822 | 1.63% | 6687 |
| chr3 | 2705044 | 1.36% | 4680 |
| chr4 | 1555628 | 0.82% | 2573 |
| chr5 | 2127514 | 1.17% | 3807 |
| chr6 | 2302661 | 1.35% | 4289 |
| chr7 | 2587075 | 1.62% | 4171 |
| chr8 | 2154289 | 1.48% | 3406 |
| chr9 | 2808519 | 2.03% | 4134 |
| chr10 | 2646606 | 1.98% | 4353 |
| chr11 | 3498284 | 2.59% | 5122 |
| chr12 | 2396367 | 1.80% | 4072 |
| chr13 | 858295 | 0.75% | 1590 |
| chr14 | 1920837 | 1.79% | 2974 |
| chr15 | 1920761 | 1.88% | 3209 |
| chr16 | 3142692 | 3.48% | 4356 |
| chr17 | 4441293 | 5.33% | 6209 |
| chr18 | 877577 | 1.09% | 1663 |
| chr19 | 4065435 | 6.94% | 5344 |
| chr20 | 1907166 | 2.96% | 3005 |
| chr21 | 898469 | 1.92% | 1300 |
| chr22 | 2437108 | 4.80% | 3222 |
| chrX | 896100 | 0.57% | 1561 |
| chrY | 19418 | 0.03% | 42 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91304 | 230 | 16658 | 637.2 | 456 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF601QOS.bed.gz | 2.22 MB | 56438bc5baa1809e4121fe49019b38e2 |
| ENCFF601QOS.tabix.bed.gz | 977.59 KB | f7ae3ec9deedc0dfbb810955a8720784 |
| ENCFF601QOS.tabix.bed.gz.tbi | 279.39 KB | 87ddc3f4d2562a3ee70c10bc6fade81d |
| genomic_resource.yaml | 1.96 KB | a120a81ecde5a92079d785ed93dcb3f3 |
| statistics/ |