Histone_ChIP-seq_ENCSR023ALV
Histone_ChIP-seq ENCSR023ALV [biosample_summary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR023ALV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR023ALV [biosamplesummary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN707XEL|/analyses/ENCAN707XEL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN707XEL|/analyses/ENCAN707XEL/} has in progress subobject document {a1e4545f-e204-4505-86a5-aa0f784b8140|/documents/a1e4545f-e204-4505-86a5-aa0f784b8140/} audit_not_compliant: Processed alignments file {ENCFF338PND|/files/ENCFF338PND/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13531418 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF338PND|/files/ENCFF338PND/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF338PND|/files/ENCFF338PND/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR023ALV | float |
Histone_ChIP-seq_ENCSR023ALV |
Histone_ChIP-seq ENCSR023ALV [biosample_summary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me1"]
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[2.01, 9.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF072QWS.bed.gz | 820.81 KB | 7a31293015e3d561e77ab5a8ef792c29 |
| ENCFF072QWS.bed.gz.dvc | 100.0 B | dd9e8d57c60d1add51413bb688909499 |
| ENCFF072QWS.tabix.bed.gz | 423.89 KB | 2d3b2e8c174b4def369458b8c6f9b824 |
| ENCFF072QWS.tabix.bed.gz.dvc | 106.0 B | d675357758c2c2d0ae476a9ccd25b75b |
| ENCFF072QWS.tabix.bed.gz.tbi | 201.03 KB | 5d452feb980d064c3d479dad7fe3012a |
| ENCFF072QWS.tabix.bed.gz.tbi.dvc | 110.0 B | 28fab6794c54e16d212f96f8523adbcc |
| genomic_resource.yaml | 3.49 KB | cffbb1e0a0df42e612891be7ed5a4173 |
| genomic_resource_original.yaml | 3.35 KB | 5df611b386ba686004e5955e4fb06008 |
| statistics/ |