Resource
| Id | Histone_ChIP-seq/ENCSR019ZRR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR019ZRR [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN543PBV|/analyses/ENCAN543PBV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF601RZI|/files/ENCFF601RZI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 30611664 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR019ZRR | float |
Histone_ChIP-seq_ENCSR019ZRR |
Histone_ChIP-seq ENCSR019ZRR [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K36me3"]
|
 |
[1.84, 16.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 117932484 | 3.67% | 154570 |
| chr1 | 11921389 | 4.79% | 15203 |
| chr1_KI270711v1_random | 946 | 2.24% | 2 |
| chr2 | 8856723 | 3.66% | 12729 |
| chr3 | 7140221 | 3.60% | 10073 |
| chr4 | 4192100 | 2.20% | 6427 |
| chr5 | 5966736 | 3.29% | 8284 |
| chr6 | 5075250 | 2.97% | 7381 |
| chr7 | 5564919 | 3.49% | 7317 |
| chr8 | 3908522 | 2.69% | 5613 |
| chr9 | 4915300 | 3.55% | 6321 |
| chr10 | 5184927 | 3.88% | 6907 |
| chr11 | 6112401 | 4.52% | 7563 |
| chr12 | 7265438 | 5.45% | 8826 |
| chr13 | 2190194 | 1.92% | 3475 |
| chr14 | 3821317 | 3.57% | 5176 |
| chr15 | 4511811 | 4.42% | 6304 |
| chr16 | 5468143 | 6.05% | 6187 |
| chr17 | 7278448 | 8.74% | 8676 |
| chr17_GL000205v2_random | 765 | 0.41% | 2 |
| chr18 | 1519181 | 1.89% | 2399 |
| chr19 | 7866731 | 13.42% | 7731 |
| chr20 | 3301763 | 5.12% | 4072 |
| chr21 | 1258954 | 2.70% | 1636 |
| chr22 | 3028022 | 5.96% | 3324 |
| chr22_KI270733v1_random | 189 | 0.11% | 1 |
| chrUn_GL000195v1 | 1141 | 0.62% | 3 |
| chrUn_GL000219v1 | 994 | 0.55% | 4 |
| chrX | 1497971 | 0.96% | 2742 |
| chrY | 81988 | 0.14% | 192 |
| 3337 contigs with no values (128307418 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 154570 | 165 | 41323 | 762.97 | 475 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF512HWA.bed.gz | 2.93 MB | 2d6553415854d938efb63232de4f86d3 |
| ENCFF512HWA.tabix.bed.gz | 1.48 MB | ac2ff1eedb9b02764c3c6f3dfa4ac0c1 |
| ENCFF512HWA.tabix.bed.gz.tbi | 169.44 KB | e2085f8058e227010a0d1856ffde15cc |
| genomic_resource.yaml | 1.96 KB | 1bc89fd1bcd6018c1577a0729e19ee55 |
| statistics/ |