Resource
| Id | Histone_ChIP-seq/ENCSR019SQX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR019SQX [biosample_summary="Homo sapiens H1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN812EWF|/analyses/ENCAN812EWF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF255JOI|/files/ENCFF255JOI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9911004 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF861OUG|/files/ENCFF861OUG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6106106 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR019SQX | float |
Histone_ChIP-seq_ENCSR019SQX |
Histone_ChIP-seq ENCSR019SQX [biosample_summary="Homo sapiens H1" and target="H3K4me3"]
|
 |
[1.51, 65.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35408828 | 1.10% | 36945 |
| chr1 | 3524370 | 1.42% | 3716 |
| chr2 | 2364657 | 0.98% | 2371 |
| chr3 | 1930125 | 0.97% | 1870 |
| chr4 | 1372658 | 0.72% | 1348 |
| chr5 | 1711736 | 0.94% | 1706 |
| chr6 | 2164627 | 1.27% | 2024 |
| chr7 | 1659005 | 1.04% | 1788 |
| chr8 | 1333576 | 0.92% | 1322 |
| chr9 | 1436506 | 1.04% | 1520 |
| chr10 | 1480270 | 1.11% | 1588 |
| chr11 | 1941725 | 1.44% | 2009 |
| chr12 | 1813728 | 1.36% | 1838 |
| chr13 | 731163 | 0.64% | 739 |
| chr14 | 1182593 | 1.10% | 1167 |
| chr15 | 1154515 | 1.13% | 1237 |
| chr16 | 1386932 | 1.54% | 1503 |
| chr17 | 2071946 | 2.49% | 2244 |
| chr18 | 605196 | 0.75% | 631 |
| chr19 | 2357714 | 4.02% | 2667 |
| chr20 | 975738 | 1.51% | 1068 |
| chr21 | 339979 | 0.73% | 371 |
| chr22 | 735735 | 1.45% | 883 |
| chrX | 1097630 | 0.70% | 1303 |
| chrY | 36704 | 0.06% | 32 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36945 | 180 | 7553 | 958.42 | 720 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF178RTX.bed.gz | 782.9 KB | e63ced422a2f8d896d468a0f80486fa7 |
| ENCFF178RTX.tabix.bed.gz | 384.21 KB | faff6a6360360ef0ff2b03282cc92fc9 |
| ENCFF178RTX.tabix.bed.gz.tbi | 167.57 KB | 5a59484c66501930555a8bec1e1d75b4 |
| genomic_resource.yaml | 2.35 KB | fd238c2a0da8095882394d3693d9f10c |
| statistics/ |