Resource

Id Histone_ChIP-seq/ENCSR018LUPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR018LUP [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K9me2"]
Description
Labels
  • accession: ENCSR018LUP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002357/
  • biosample_summary: Homo sapiens SU-DHL-6
  • date_created: 2014-02-20T05:42:58.523549+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR018LUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR018LUP float

Histone_ChIP-seq_ENCSR018LUP

Histone_ChIP-seq ENCSR018LUP [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K9me2"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR018LUP [1.81, 5.12]
n
789,686
mean
3.21
sd
0.447

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7896860.02% 2116
chr1 37672 0.02% 101
chr2 53980 0.02% 149
chr3 45655 0.02% 129
chr4 21089 0.01% 61
chr5 52866 0.03% 147
chr6 66397 0.04% 178
chr7 84987 0.05% 220
chr8 110246 0.08% 276
chr9 66338 0.05% 175
chr10 27440 0.02% 72
chr11 33135 0.02% 93
chr12 22937 0.02% 62
chr13 25408 0.02% 72
chr14 20012 0.02% 55
chr15 13282 0.01% 36
chr16 10983 0.01% 30
chr17 6665 0.01% 21
chr18 64034 0.08% 167
chr19 4214 0.01% 11
chr20 10039 0.02% 31
chr21 9995 0.02% 25
chr22 2312 <0.01% 5
3344 contigs with no values (342345395 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2116 208 994 373.2 352
global segment-length histogram

Files

Filename Size md5
ENCFF929DUJ.bed.gz 42.13 KB 7148389f7388def2814df87b908175c7
ENCFF929DUJ.tabix.bed.gz 21.99 KB 28b29b79c74b743000be92823d21f02b
ENCFF929DUJ.tabix.bed.gz.tbi 25.33 KB c0ee31a9229584c20ea4f978a7752cce
genomic_resource.yaml 2.61 KB 4a92662eebf9488ef4c39fb9eadbeea5
statistics/