Resource
| Id | Histone_ChIP-seq/ENCSR018LUP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR018LUP [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K9me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN734NGS|/analyses/ENCAN734NGS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN734NGS|/analyses/ENCAN734NGS/} has in progress subobject document {02111626-8295-4054-9188-5627c7ea91b7|/documents/02111626-8295-4054-9188-5627c7ea91b7/} audit_not_compliant: Processed alignments file {ENCFF617HNP|/files/ENCFF617HNP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20076534 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF939ANP|/files/ENCFF939ANP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28485122 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR018LUP | float |
Histone_ChIP-seq_ENCSR018LUP |
Histone_ChIP-seq ENCSR018LUP [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K9me2"]
|
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[1.81, 5.12] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 789686 | 0.02% | 2116 |
| chr1 | 37672 | 0.02% | 101 |
| chr2 | 53980 | 0.02% | 149 |
| chr3 | 45655 | 0.02% | 129 |
| chr4 | 21089 | 0.01% | 61 |
| chr5 | 52866 | 0.03% | 147 |
| chr6 | 66397 | 0.04% | 178 |
| chr7 | 84987 | 0.05% | 220 |
| chr8 | 110246 | 0.08% | 276 |
| chr9 | 66338 | 0.05% | 175 |
| chr10 | 27440 | 0.02% | 72 |
| chr11 | 33135 | 0.02% | 93 |
| chr12 | 22937 | 0.02% | 62 |
| chr13 | 25408 | 0.02% | 72 |
| chr14 | 20012 | 0.02% | 55 |
| chr15 | 13282 | 0.01% | 36 |
| chr16 | 10983 | 0.01% | 30 |
| chr17 | 6665 | 0.01% | 21 |
| chr18 | 64034 | 0.08% | 167 |
| chr19 | 4214 | 0.01% | 11 |
| chr20 | 10039 | 0.02% | 31 |
| chr21 | 9995 | 0.02% | 25 |
| chr22 | 2312 | <0.01% | 5 |
| 3344 contigs with no values (342345395 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 2116 | 208 | 994 | 373.2 | 352 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF929DUJ.bed.gz | 42.13 KB | 7148389f7388def2814df87b908175c7 |
| ENCFF929DUJ.tabix.bed.gz | 21.99 KB | 28b29b79c74b743000be92823d21f02b |
| ENCFF929DUJ.tabix.bed.gz.tbi | 25.33 KB | c0ee31a9229584c20ea4f978a7752cce |
| genomic_resource.yaml | 2.61 KB | 4a92662eebf9488ef4c39fb9eadbeea5 |
| statistics/ |
