Resource
| Id | Histone_ChIP-seq/ENCSR016XBE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR016XBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN493LQL|/analyses/ENCAN493LQL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF465XYF|/files/ENCFF465XYF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13884170 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR016XBE | float |
Histone_ChIP-seq_ENCSR016XBE |
Histone_ChIP-seq ENCSR016XBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K27ac"]
|
 |
[1.97, 80.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56616129 | 1.76% | 70138 |
| chr1 | 5860919 | 2.35% | 7057 |
| chr2 | 4052989 | 1.67% | 5167 |
| chr3 | 3409322 | 1.72% | 4306 |
| chr4 | 1951653 | 1.03% | 2643 |
| chr5 | 2955756 | 1.63% | 3719 |
| chr6 | 2794553 | 1.64% | 3477 |
| chr7 | 2360877 | 1.48% | 3151 |
| chr8 | 2289105 | 1.58% | 2835 |
| chr9 | 2743667 | 1.98% | 3305 |
| chr10 | 2897070 | 2.17% | 3456 |
| chr11 | 3605748 | 2.67% | 4292 |
| chr12 | 2835385 | 2.13% | 3526 |
| chr13 | 1221945 | 1.07% | 1577 |
| chr14 | 1965230 | 1.84% | 2342 |
| chr15 | 1929898 | 1.89% | 2493 |
| chr16 | 2001575 | 2.22% | 2481 |
| chr17 | 3383584 | 4.06% | 4000 |
| chr18 | 1060964 | 1.32% | 1440 |
| chr19 | 2602323 | 4.44% | 3055 |
| chr20 | 1669792 | 2.59% | 2030 |
| chr21 | 618390 | 1.32% | 792 |
| chr22 | 1582570 | 3.11% | 1814 |
| chrX | 822814 | 0.53% | 1180 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 70138 | 185 | 19541 | 807.21 | 585 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF970ZKX.bed.gz | 1.38 MB | b1554a3aa6ec9bda76f0bed9960efc3c |
| ENCFF970ZKX.tabix.bed.gz | 697.86 KB | 90e5b14035d2829087a82f605c3f5d04 |
| ENCFF970ZKX.tabix.bed.gz.tbi | 228.41 KB | 195c578f43614c651459f820b26d8cdf |
| genomic_resource.yaml | 2.05 KB | a3a55561c171fd922cf3378bef76ccaf |
| statistics/ |