Histone_ChIP-seq_ENCSR012PII
Histone_ChIP-seq ENCSR012PII [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR012PII |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR012PII [biosamplesummary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN619ADQ|/analyses/ENCAN619ADQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF452ZIB|/files/ENCFF452ZIB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19174928 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF452ZIB|/files/ENCFF452ZIB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR012PII | float |
Histone_ChIP-seq_ENCSR012PII |
Histone_ChIP-seq ENCSR012PII [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27ac"]
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[1.86, 149] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF706YSV.bed.gz | 1.13 MB | e046449f8657faee7d5baf86e8be9e28 |
| ENCFF706YSV.bed.gz.dvc | 101.0 B | bd98995ace3e34da808b75f003b544e5 |
| ENCFF706YSV.tabix.bed.gz | 497.11 KB | 646f9585a398792b8cc41aea7a9bb6f5 |
| ENCFF706YSV.tabix.bed.gz.dvc | 106.0 B | 30da3b956e01e8692dabddd54b08e8bf |
| ENCFF706YSV.tabix.bed.gz.tbi | 166.16 KB | 001270355b403fd75e400e53c40097fa |
| ENCFF706YSV.tabix.bed.gz.tbi.dvc | 110.0 B | 328d33679315c120d205a11da07f5edd |
| genomic_resource.yaml | 2.63 KB | a7245535b4043ad410550b135ee0ef41 |
| genomic_resource_original.yaml | 2.48 KB | 2ff990a5effe4efcb2e132209aa52331 |
| statistics/ |