Resource

Id Histone_ChIP-seq/ENCSR011KBScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR011KBS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR011KBS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)
  • date_created: 2020-07-02T16:38:44.270477+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR011KBS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (84 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR011KBS float

Histone_ChIP-seq_ENCSR011KBS
Histone_ChIP-seq ENCSR011KBS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR011KBS [1.84, 54.2]
n
32,164,965
mean
19.2
sd
10

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 321649651.00% 20426
chr1 3314771 1.33% 2095
chr2 2190534 0.90% 1372
chr3 1777348 0.90% 1115
chr4 1205936 0.63% 734
chr5 1488537 0.82% 886
chr6 1846207 1.08% 1113
chr7 1519507 0.95% 1006
chr8 1151573 0.79% 719
chr9 1345350 0.97% 878
chr10 1336336 1.00% 826
chr11 1766242 1.31% 1092
chr12 1683308 1.26% 1031
chr13 627462 0.55% 393
chr14 1052898 0.98% 642
chr15 1042672 1.02% 669
chr16 1287438 1.43% 834
chr17 1932960 2.32% 1226
chr18 532030 0.66% 334
chr19 2165269 3.69% 1505
chr20 853380 1.32% 551
chr21 313912 0.67% 208
chr22 750973 1.48% 515
chrX 943593 0.60% 661
chrY 36729 0.06% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20426 255 11621 1574.71 1447
global segment-length histogram

Files

Filename Size md5
ENCFF466DMK.bed.gz 564.98 KB 6e47355009d56faf8ea458356a1cbebb
ENCFF466DMK.tabix.bed.gz 240.94 KB 8768972c2ccd943399a4d60410427304
ENCFF466DMK.tabix.bed.gz.tbi 136.29 KB 4e7fe8d58884367d93703d7d75b35f3c
genomic_resource.yaml 1.87 KB a9ad98f3a069905632083164bfbad541
statistics/