Resource

Id Histone_ChIP-seq/ENCSR011IBZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR011IBZ [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR011IBZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:14.460570+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR011IBZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 48 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR011IBZ float

Histone_ChIP-seq_ENCSR011IBZ
Histone_ChIP-seq ENCSR011IBZ [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR011IBZ [1.36, 46.3]
n
246,306,081
mean
9.54
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2463060817.66% 253594
chr1 24007713 9.64% 24003
chr1_KI270706v1_random 569 0.33% 2
chr1_KI270708v1_random 368 0.29% 1
chr1_KI270710v1_random 339 0.84% 1
chr1_KI270713v1_random 6214 15.25% 10
chr1_KI270714v1_random 842 2.02% 2
chr2 18494088 7.64% 20072
chr3 13191075 6.65% 14868
chr3_GL000221v1_random 2279 1.47% 4
chr4 8202594 4.31% 10137
chr4_GL000008v2_random 472 0.23% 1
chr5 11392742 6.28% 12727
chr6 11596564 6.79% 13243
chr7 12041963 7.56% 13189
chr8 11503345 7.93% 12239
chr9 10764343 7.78% 10675
chr9_KI270718v1_random 883 2.32% 3
chr9_KI270719v1_random 691 0.39% 2
chr10 12448729 9.30% 12847
chr11 12713384 9.41% 12383
chr11_KI270721v1_random 2313 2.31% 6
chr12 11315063 8.49% 11764
chr13 4832746 4.23% 6053
chr14 7856479 7.34% 7975
chr14_GL000009v2_random 1827 0.91% 5
chr14_GL000194v1_random 2822 1.47% 6
chr14_KI270723v1_random 1592 4.18% 3
chr14_KI270724v1_random 640 1.62% 1
chr14_KI270726v1_random 1247 2.85% 2
chr15 8313845 8.15% 8621
chr15_KI270727v1_random 1305 0.29% 3
chr16 11566770 12.80% 10376
chr16_KI270728v1_random 1773 0.09% 3
chr17 14813225 17.79% 12820
chr17_GL000205v2_random 10931 5.89% 12
chr17_KI270729v1_random 649 0.23% 2
chr18 4595051 5.72% 5290
chr19 11580340 19.76% 9971
chr20 8945993 13.88% 8322
chr21 3496125 7.48% 3441
chr22 7832894 15.41% 6426
chr22_KI270731v1_random 3976 2.64% 9
chr22_KI270733v1_random 1891 1.05% 4
chr22_KI270734v1_random 2539 1.54% 6
chr22_KI270735v1_random 250 0.58% 1
chrUn_GL000195v1 1387 0.76% 3
chrUn_GL000214v1 765 0.56% 1
chrUn_GL000216v2 806 0.46% 2
chrUn_GL000219v1 7417 4.14% 12
chrUn_GL000220v1 601 0.37% 2
chrUn_GL000224v1 659 0.37% 2
chrUn_KI270438v1 837 0.74% 2
chrUn_KI270442v1 823 0.21% 1
chrUn_KI270742v1 280 0.15% 1
chrUn_KI270744v1 7254 4.31% 13
chrUn_KI270751v1 1071 0.71% 2
chrUn_KI270753v1 3003 4.77% 5
chrUn_KI270755v1 1053 2.87% 2
chrX 4726200 3.03% 6010
chrY 2442 <0.01% 5
3306 contigs with no values (122002877 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 253594 250 32332 971.26 583
global segment-length histogram

Files

Filename Size md5
ENCFF249VSU.bed.gz 5.4 MB a6b08263d4efaff6166edb862b7d8e91
ENCFF249VSU.tabix.bed.gz 2.5 MB 1dcbf62798b9280fffa172c797eabb8c
ENCFF249VSU.tabix.bed.gz.tbi 438.28 KB 22998fa430cecdebbe00bbfd62290991
genomic_resource.yaml 3.12 KB 5f6248bd5482352d8276289d51467c72
statistics/